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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_07g337150v5   uncharacterized protein 
 ath-u.5   RFC2   replication factor C 2 
 gma-u.5   100781364   replication factor C subunit 2 
 gma-u.5   100775926   replication factor C subunit 2 
 sly-u.5   101267918   replication factor C subunit 2 
 osa-u.5   4336704   replication factor C subunit 4-like 
 zma-u.5   100282678   uncharacterized LOC100282678 
 vvi-u.5   100246202   replication factor C subunit 2 
 ppo-u.5   7479266   replication factor C subunit 2 
 mtr-u.5   25493662   replication factor C subunit 2 

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Top 50 coexpressed genes to CHLRE_07g337150v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_07g337150v5 (cre-r.1 coexpression data)

CoexMap"5725665"


creCHLRE_07g337150v5 | Entrez gene ID : 5725665      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03030 [list] [network] DNA replication (30 genes)
cre03410 [list] [network] Base excision repair (25 genes)
cre03420 [list] [network] Nucleotide excision repair (42 genes)
cre03430 [list] [network] Mismatch repair (15 genes)
GO BP
GO:0006261 [list] [network] DNA-templated DNA replication  (66 genes)  IEA  
GO:0006281 [list] [network] DNA repair  (229 genes)  IEA  
GO CC
GO:0005663 [list] [network] DNA replication factor C complex  (5 genes)  IEA  
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO MF
GO:0003689 [list] [network] DNA clamp loader activity  (5 genes)  IEA  
GO:0016887 [list] [network] ATP hydrolysis activity  (290 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (670 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (1223 genes)  IEA  
Protein XP_001700086.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  cysk 2,  vacu 1,  pero 1,  golg 1  (predict for XP_001700086.1)
Subcellular
localization
TargetP
other 9  (predict for XP_001700086.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_07g337150v5

.
ath-u.5
for
RFC2

.
gma-u.5
for
100781364

.
gma-u.5
for
100775926

.
sly-u.5
for
101267918

.
osa-u.5
for
4336704

.
zma-u.5
for
100282678

.
vvi-u.5
for
100246202

.
ppo-u.5
for
7479266

.
mtr-u.5
for
25493662

.


Ortholog ID: 10530
Species ath gma gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol RFC2 LOC100781364 LOC100775926 LOC101267918 LOC4336704 LOC100282678 LOC103838295 LOC100246202 LOC7479266 LOC25493662 LOC123190036 LOC123054143 LOC123427476 LOC107929188 LOC107963759 LOC106410763 LOC106450978 CHLRE_07g337150v5 LOC8057601 LOC102581237 LOC102617383 LOC100829254 LOC107779141 LOC107784098
Function* replication factor C 2 replication factor C subunit 2 replication factor C subunit 2 replication factor C subunit 2 replication factor C subunit 4-like uncharacterized LOC100282678 replication factor C subunit 2 replication factor C subunit 2 replication factor C subunit 2 replication factor C subunit 2 replication factor C subunit 4 replication factor C subunit 4 replication factor C subunit 4 replication factor C subunit 2 replication factor C subunit 2 replication factor C subunit 2 replication factor C subunit 2 uncharacterized protein replication factor C subunit 4 replication factor C subunit 2 replication factor C subunit 2 replication factor C subunit 4 replication factor C subunit 2 replication factor C subunit 2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 7
ath03410 Base excision repair 6
ath03420 Nucleotide excision repair 5
ath03430 Mismatch repair 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03430 Mismatch repair 7
gma03030 DNA replication 7
gma03410 Base excision repair 6
gma03420 Nucleotide excision repair 6
gma03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 5
gma03082 ATP-dependent chromatin remodeling 4
gma03420 Nucleotide excision repair 2
gma03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 5
sly03010 Ribosome 4
sly03030 DNA replication 2
sly03410 Base excision repair 2
sly03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03030 DNA replication 3
osa03410 Base excision repair 3
osa03420 Nucleotide excision repair 3
osa03430 Mismatch repair 3
osa03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03030 DNA replication 7
zma03430 Mismatch repair 5
zma03410 Base excision repair 4
zma03420 Nucleotide excision repair 3
zma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 2
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03030 DNA replication 4
vvi03420 Nucleotide excision repair 3
vvi03430 Mismatch repair 3
vvi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 3
ppo03410 Base excision repair 3
ppo03040 Spliceosome 2
ppo03030 DNA replication 2
ppo03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 4
tae03410 Base excision repair 4
tae03420 Nucleotide excision repair 4
tae03430 Mismatch repair 4
tae03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 7
tae03030 DNA replication 3
tae03410 Base excision repair 3
tae03420 Nucleotide excision repair 3
tae03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 9
ghi03420 Nucleotide excision repair 9
ghi03430 Mismatch repair 9
ghi03410 Base excision repair 6
ghi03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 9
ghi03420 Nucleotide excision repair 9
ghi03430 Mismatch repair 9
ghi03410 Base excision repair 6
ghi03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 2
bna03410 Base excision repair 2
bna03420 Nucleotide excision repair 2
bna03430 Mismatch repair 2
bna00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 2
bna03410 Base excision repair 2
bna03420 Nucleotide excision repair 2
bna03430 Mismatch repair 2
bna00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 8
cre03410 Base excision repair 6
cre03420 Nucleotide excision repair 6
cre03430 Mismatch repair 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 11
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 6
nta03030 DNA replication 2
nta03410 Base excision repair 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03440 Homologous recombination 2
nta03030 DNA replication 2
nta03410 Base excision repair 2
nta03420 Nucleotide excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842620 100781364 100775926 101267918 4336704 100282678 103838295 100246202 7479266 25493662 123190036 123054143 123427476 107929188 107963759 106410763 106450978 5725665 8057601 102581237 102617383 100829254 107779141 107784098
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