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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_01g002200v5   uncharacterized protein 
 ath-u.5   NRPB6B   RNA polymerase Rpb6 
 ath-u.5   NRPB6A   RNA polymerase Rpb6 
 gma-u.5   100305739   uncharacterized LOC100305739 
 gma-u.5   100794926   DNA-directed RNA polymerases II, IV and V subunit 6A 
 sly-u.5   101259186   DNA-directed RNA polymerases II and V subunit 6B 
 osa-u.5   4343168   DNA-directed RNA polymerases II, IV and V subunit 6A 
 osa-u.5   4333343   DNA-directed RNA polymerases II, IV and V subunit 6A 
 zma-u.5   100283558   uncharacterized LOC100283558 
 zma-u.5   100282532   DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide 
 vvi-u.5   100243758   DNA-directed RNA polymerases II and V subunit 6B 
 vvi-u.5   100253791   DNA-directed RNA polymerases II, IV and V subunit 6A 
 ppo-u.5   7484401   DNA-directed RNA polymerases II, IV and V subunit 6A 
 ppo-u.5   7474023   DNA-directed RNA polymerases II, IV and V subunit 6A 
 mtr-u.5   25479674   DNA-directed RNA polymerases II, IV and V subunit 6A 
 mtr-u.5   11444744   DNA-directed RNA polymerases II, IV and V subunit 6A 

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Top 50 coexpressed genes to CHLRE_01g002200v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_01g002200v5 (cre-r.1 coexpression data)

CoexMap"5725893"


creCHLRE_01g002200v5 | Entrez gene ID : 5725893    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 2 2 1 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03020 [list] [network] RNA polymerase (29 genes)
cre03420 [list] [network] Nucleotide excision repair (42 genes)
GO BP
GO:0006351 [list] [network] DNA-templated transcription  (95 genes)  IEA  
GO CC
GO:0005665 [list] [network] RNA polymerase II, core complex  (12 genes)  IEA  
GO:0005736 [list] [network] RNA polymerase I complex  (12 genes)  IEA  
GO:0005666 [list] [network] RNA polymerase III complex  (16 genes)  IEA  
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO MF
GO:0003899 [list] [network] DNA-directed RNA polymerase activity  (16 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (670 genes)  IEA  
Protein XP_042928026.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  mito 3,  nucl_plas 3  (predict for XP_042928026.1)
Subcellular
localization
TargetP
other 9  (predict for XP_042928026.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_01g002200v5

.
ath-u.5
for
NRPB6B

.
ath-u.5
for
NRPB6A

.
gma-u.5
for
100305739

.
gma-u.5
for
100794926

.
sly-u.5
for
101259186

.
osa-u.5
for
4343168

.
osa-u.5
for
4333343

.
zma-u.5
for
100283558

.
zma-u.5
for
100282532

.
vvi-u.5
for
100243758

.
vvi-u.5
for
100253791

.
ppo-u.5
for
7484401

.
ppo-u.5
for
7474023

.
mtr-u.5
for
25479674

.
mtr-u.5
for
11444744

.


Ortholog ID: 5050
Species ath ath gma gma sly osa osa zma zma bra vvi vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sbi sot cit bdi bdi nta nta
Symbol NRPB6B NRPB6A LOC100794926 LOC100305739 LOC101259186 LOC4333343 LOC4343168 LOC100282532 LOC100283558 LOC103837016 LOC100243758 LOC100253791 LOC7474023 LOC7484401 LOC11444744 LOC25479674 LOC123052087 LOC123044209 LOC123425302 LOC107909149 LOC107922778 LOC106390928 LOC106401954 CHLRE_01g002200v5 LOC110431821 LOC8059770 LOC102584130 LOC102623212 LOC100844296 LOC100845664 LOC107810104 LOC107770258
Function* RNA polymerase Rpb6 RNA polymerase Rpb6 DNA-directed RNA polymerases II, IV and V subunit 6A uncharacterized LOC100305739 DNA-directed RNA polymerases II and V subunit 6B DNA-directed RNA polymerases II, IV and V subunit 6A DNA-directed RNA polymerases II, IV and V subunit 6A DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide uncharacterized LOC100283558 DNA-directed RNA polymerases II, IV and V subunit 6A DNA-directed RNA polymerases II and V subunit 6B DNA-directed RNA polymerases II, IV and V subunit 6A DNA-directed RNA polymerases II, IV and V subunit 6A DNA-directed RNA polymerases II, IV and V subunit 6A DNA-directed RNA polymerases II, IV and V subunit 6A DNA-directed RNA polymerases II, IV and V subunit 6A DNA-directed RNA polymerases II, IV and V subunit 6A DNA-directed RNA polymerases II, IV and V subunit 6A DNA-directed RNA polymerases II, IV and V subunit 6A-like DNA-directed RNA polymerases II and V subunit 6B DNA-directed RNA polymerases II, IV and V subunit 6A DNA-directed RNA polymerases II, IV and V subunit 6A DNA-directed RNA polymerases II, IV and V subunit 6A uncharacterized protein DNA-directed RNA polymerases II, IV and V subunit 6A-like DNA-directed RNA polymerases II, IV and V subunit 6A DNA-directed RNA polymerases II and V subunit 6B-like DNA-directed RNA polymerases II, IV and V subunit 6A DNA-directed RNA polymerases II and V subunit 6B DNA-directed RNA polymerases II and V subunit 6B DNA-directed RNA polymerases II and V subunit 6B DNA-directed RNA polymerases II and V subunit 6B
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 9
ath03018 RNA degradation 4
ath03020 RNA polymerase 3
ath03420 Nucleotide excision repair 3
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
ath03013 Nucleocytoplasmic transport 2
ath03015 mRNA surveillance pathway 2
ath03020 RNA polymerase 2
ath03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 4
gma03040 Spliceosome 3
gma03020 RNA polymerase 2
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03020 RNA polymerase 2
gma03420 Nucleotide excision repair 2
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 5
sly03040 Spliceosome 3
sly03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03020 RNA polymerase 3
osa03420 Nucleotide excision repair 3
osa03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03020 RNA polymerase 4
osa03420 Nucleotide excision repair 4
osa03040 Spliceosome 2
osa03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03420 Nucleotide excision repair 3
zma03013 Nucleocytoplasmic transport 2
zma03040 Spliceosome 2
zma03020 RNA polymerase 2
zma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 3
zma03040 Spliceosome 2
zma03020 RNA polymerase 2
zma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 6
bra03040 Spliceosome 5
bra03020 RNA polymerase 2
bra03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00270 Cysteine and methionine metabolism 2
vvi00920 Sulfur metabolism 2
vvi01200 Carbon metabolism 2
vvi01230 Biosynthesis of amino acids 2
vvi01320 Sulfur cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 4
ppo03040 Spliceosome 2
ppo03020 RNA polymerase 2
ppo03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03020 RNA polymerase 3
ppo03420 Nucleotide excision repair 3
ppo03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
mtr03010 Ribosome 3
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 13
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 5
tae03420 Nucleotide excision repair 5
tae03250 Viral life cycle - HIV-1 3
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
tae03020 RNA polymerase 3
tae03420 Nucleotide excision repair 3
tae03250 Viral life cycle - HIV-1 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00190 Oxidative phosphorylation 5
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
ghi00020 Citrate cycle (TCA cycle) 2
ghi00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04626 Plant-pathogen interaction 6
ghi03018 RNA degradation 4
ghi04141 Protein processing in endoplasmic reticulum 2
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 6
bna03420 Nucleotide excision repair 6
bna03010 Ribosome 5
bna03082 ATP-dependent chromatin remodeling 2
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 4
bna03040 Spliceosome 4
bna03010 Ribosome 4
bna03020 RNA polymerase 2
bna03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 2
sbi03040 Spliceosome 2
sbi03020 RNA polymerase 2
sbi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 4
sbi03040 Spliceosome 3
sbi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 15
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03020 RNA polymerase 2
bdi03420 Nucleotide excision repair 2
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03020 RNA polymerase 3
bdi03420 Nucleotide excision repair 2
bdi03015 mRNA surveillance pathway 2
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 4
nta03040 Spliceosome 4
nta03013 Nucleocytoplasmic transport 3
nta03015 mRNA surveillance pathway 3
nta03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
nta04141 Protein processing in endoplasmic reticulum 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 815006 835269 100794926 100305739 101259186 4333343 4343168 100282532 100283558 103837016 100243758 100253791 7474023 7484401 11444744 25479674 123052087 123044209 123425302 107909149 107922778 106390928 106401954 5725893 110431821 8059770 102584130 102623212 100844296 100845664 107810104 107770258
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