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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_15g635100v5   uncharacterized protein 
 ath-u.5   AT5G14370   CCT motif family protein 
 ath-u.5   AT1G07050   CCT motif family protein 
 ath-u.5   BBX16   B-box type zinc finger protein with CCT domain-containing protein 
 gma-u.5   100803772   CCT motif family protein 
 gma-u.5   100801038   protein CHLOROPLAST IMPORT APPARATUS 2 
 gma-u.5   100798231   two-component response regulator-like APRR9 
 sly-u.5   101256821   zinc finger protein CONSTANS-LIKE 16 
 osa-u.5   4344538   zinc finger protein CO3-like 
 zma-u.5   100277880   uncharacterized LOC100277880 
 zma-u.5   100277302   Zinc finger protein CONSTANS-LIKE 7 
 vvi-u.5   100254358   uncharacterized LOC100254358 
 vvi-u.5   100241511   zinc finger protein CONSTANS-LIKE 7 
 ppo-u.5   7496802   zinc finger protein CONSTANS-LIKE 16 
 mtr-u.5   11427435   zinc finger protein CONSTANS-LIKE 6 

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Top 50 coexpressed genes to CHLRE_15g635100v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_15g635100v5 (cre-r.1 coexpression data)

CoexMap"5726146"


creCHLRE_15g635100v5 | Entrez gene ID : 5726146    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 3 3 1 1 2 2 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006355 [list] [network] regulation of DNA-templated transcription  (405 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO MF
GO:0005515 [list] [network] protein binding  (1927 genes)  IEA  
Protein XP_042916363.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  cyto 1,  plas 1,  pero 1,  cyto_pero 1,  cyto_plas 1  (predict for XP_042916363.1)
Subcellular
localization
TargetP
other 6  (predict for XP_042916363.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_15g635100v5

.
ath-u.5
for
AT5G14370

.
ath-u.5
for
AT1G07050

.
ath-u.5
for
BBX16

.
gma-u.5
for
100803772

.
gma-u.5
for
100801038

.
gma-u.5
for
100798231

.
sly-u.5
for
101256821

.
osa-u.5
for
4344538

.
zma-u.5
for
100277880

.
zma-u.5
for
100277302

.
vvi-u.5
for
100254358

.
vvi-u.5
for
100241511

.
ppo-u.5
for
7496802

.
mtr-u.5
for
11427435

.


Ortholog ID: 3728
Species ath ath gma gma sly osa zma zma bra bra vvi vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit cit bdi nta nta
Symbol AT5G14370 AT1G07050 LOC100801038 LOC100798231 LOC101256821 LOC4344538 LOC100277302 LOC100277880 LOC103836459 LOC103846490 LOC100241511 LOC100254358 LOC7496802 LOC11427435 LOC123167281 LOC123159788 LOC123411474 LOC107958532 LOC107888734 LOC106418445 LOC111210014 CHLRE_15g635100v5 LOC8074042 LOC102586988 LOC102622630 LOC102613215 LOC100827684 LOC107802628 LOC107786935
Function* CCT motif family protein CCT motif family protein protein CHLOROPLAST IMPORT APPARATUS 2 two-component response regulator-like APRR9 zinc finger protein CONSTANS-LIKE 16 zinc finger protein CO3-like Zinc finger protein CONSTANS-LIKE 7 uncharacterized LOC100277880 zinc finger protein CONSTANS-LIKE 7 uncharacterized LOC103846490 zinc finger protein CONSTANS-LIKE 7 uncharacterized LOC100254358 zinc finger protein CONSTANS-LIKE 16 zinc finger protein CONSTANS-LIKE 6 uncharacterized LOC123167281 uncharacterized LOC123159788 uncharacterized LOC123411474 protein CHLOROPLAST IMPORT APPARATUS 2 zinc finger protein CONSTANS-LIKE 7 uncharacterized LOC106418445 zinc finger protein CO3 uncharacterized protein uncharacterized LOC8074042 protein CHLOROPLAST IMPORT APPARATUS 2 zinc finger protein CONSTANS-LIKE 7-like zinc finger protein CONSTANS-LIKE 6 putative protein TPRXL uncharacterized LOC107802628 uncharacterized LOC107786935
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00195 Photosynthesis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00195 Photosynthesis 7
mtr00196 Photosynthesis - antenna proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
tae00940 Phenylpropanoid biosynthesis 2
tae00500 Starch and sucrose metabolism 2
tae00520 Amino sugar and nucleotide sugar metabolism 2
tae01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00460 Cyanoamino acid metabolism 2
hvu00500 Starch and sucrose metabolism 2
hvu00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04820 Cytoskeleton in muscle cells 2
ghi00460 Cyanoamino acid metabolism 2
ghi00500 Starch and sucrose metabolism 2
ghi00999 Biosynthesis of various plant secondary metabolites 2
ghi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 4
ghi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00195 Photosynthesis 14
sot00196 Photosynthesis - antenna proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00196 Photosynthesis - antenna proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00630 Glyoxylate and dicarboxylate metabolism 3
nta01200 Carbon metabolism 3
nta04146 Peroxisome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00630 Glyoxylate and dicarboxylate metabolism 3
nta01200 Carbon metabolism 3
nta04146 Peroxisome 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 831288 837216 100801038 100798231 101256821 4344538 100277302 100277880 103836459 103846490 100241511 100254358 7496802 11427435 123167281 123159788 123411474 107958532 107888734 106418445 111210014 5726146 8074042 102586988 102622630 102613215 100827684 107802628 107786935
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