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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_15g643703v5   uncharacterized protein 
 ath-u.5   AT3G21215   RNA-binding (RRM/RBD/RNP motifs) family protein 
 gma-u.5   100817421   U1 small nuclear ribonucleoprotein A 
 gma-u.5   100797865   RNA-binding protein mde7 
 sly-u.5   101266614   RNA-binding (RRM/RBD/RNP motifs) family protein 
 osa-u.5   4345075   uncharacterized LOC4345075 
 zma-u.5   100283020   uncharacterized LOC100283020 
 vvi-u.5   100263943   cell wall integrity protein scw1 
 ppo-u.5   7490860   uncharacterized LOC7490860 
 ppo-u.5   7491572   uncharacterized LOC7491572 
 mtr-u.5   11419461   RNA-binding protein, mRNA-processing factor 2a 

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Top 50 coexpressed genes to CHLRE_15g643703v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_15g643703v5 (cre-r.1 coexpression data)

CoexMap"5726262"


creCHLRE_15g643703v5 | Entrez gene ID : 5726262    
Species cre ath gma sly osa zma vvi ppo mtr hvu sot tae nta bra cit ghi bna bdi sbi
Paralog 1 1 2 1 1 1 1 2 1 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0003729 [list] [network] mRNA binding  (109 genes)  IEA  
Protein XP_042916561.1 [sequence] [blastp]
Subcellular
localization
wolf
cysk 5,  nucl 3,  cyto 1,  mito 1,  pero 1,  cyto_pero 1  (predict for XP_042916561.1)
Subcellular
localization
TargetP
other 5  (predict for XP_042916561.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_15g643703v5

.
ath-u.5
for
AT3G21215

.
gma-u.5
for
100817421

.
gma-u.5
for
100797865

.
sly-u.5
for
101266614

.
osa-u.5
for
4345075

.
zma-u.5
for
100283020

.
vvi-u.5
for
100263943

.
ppo-u.5
for
7490860

.
ppo-u.5
for
7491572

.
mtr-u.5
for
11419461

.


Ortholog ID: 7588
Species ath gma gma sly osa zma bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre cre sbi sot cit bdi nta nta
Symbol AT3G21215 LOC100817421 LOC100797865 LOC101266614 LOC4345075 LOC100283020 LOC103835330 LOC100263943 LOC7490860 LOC7491572 LOC11419461 LOC123156669 LOC123154627 LOC123407378 LOC107930408 LOC107925052 LOC106365601 LOC125580232 CHLRE_08g364700v5 CHLRE_15g643703v5 LOC8073260 LOC102579827 LOC102624190 LOC100829014 LOC107771023 LOC107762394
Function* RNA-binding (RRM/RBD/RNP motifs) family protein U1 small nuclear ribonucleoprotein A RNA-binding protein mde7 RNA-binding (RRM/RBD/RNP motifs) family protein uncharacterized LOC4345075 uncharacterized LOC100283020 RNA-binding protein with multiple splicing cell wall integrity protein scw1 uncharacterized LOC7490860 uncharacterized LOC7491572 RNA-binding protein, mRNA-processing factor 2a RNA-binding protein mde7 RNA-binding protein mde7 RNA-binding protein mde7 cell wall integrity protein scw1 cell wall integrity protein scw1 RNA-binding protein, mRNA-processing factor 2a U1 small nuclear ribonucleoprotein A-like uncharacterized protein uncharacterized protein RNA-binding protein mde7 RNA-binding protein with multiple splicing uncharacterized LOC102624190 RNA-binding protein mde7 uncharacterized LOC107771023 uncharacterized LOC107762394
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03018 RNA degradation 2
sly03040 Spliceosome 2
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
vvi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 7
ppo03013 Nucleocytoplasmic transport 2
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 5
ppo03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03022 Basal transcription factors 3
tae03015 mRNA surveillance pathway 2
tae00960 Tropane, piperidine and pyridine alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03022 Basal transcription factors 3
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
bna03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 3
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 7
nta03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821675 100817421 100797865 101266614 4345075 100283020 103835330 100263943 7490860 7491572 11419461 123156669 123154627 123407378 107930408 107925052 106365601 125580232 5721640 5726262 8073260 102579827 102624190 100829014 107771023 107762394
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