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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_07g314900v5   uncharacterized protein 
 ath-u.5   AT3G18600   P-loop containing nucleoside triphosphate hydrolases superfamily protein 
 ath-u.5   AT5G65900   DEA(D/H)-box RNA helicase family protein 
 gma-u.5   100798885   DEAD-box ATP-dependent RNA helicase 27 
 gma-u.5   100798290   DEAD-box ATP-dependent RNA helicase 27 
 gma-u.5   100797375   DEAD-box ATP-dependent RNA helicase 27 
 sly-u.5   101245343   DEAD-box ATP-dependent RNA helicase 51 
 osa-u.5   4334469   DEAD-box ATP-dependent RNA helicase 27-like 
 zma-u.5   100501728   DEAD-box ATP-dependent RNA helicase 51 
 zma-u.5   103640803   DEAD-box ATP-dependent RNA helicase 27 
 vvi-u.5   100242258   DEAD-box ATP-dependent RNA helicase 27 
 ppo-u.5   18102018   DEAD-box ATP-dependent RNA helicase 51-like 
 ppo-u.5   7468000   DEAD-box ATP-dependent RNA helicase 51 
 mtr-u.5   25486792   DEAD-box ATP-dependent RNA helicase 27 
 mtr-u.5   11441584   DEAD-box ATP-dependent RNA helicase 27 
 mtr-u.5   11438740   DEAD-box ATP-dependent RNA helicase 51 

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Top 50 coexpressed genes to CHLRE_07g314900v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_07g314900v5 (cre-r.1 coexpression data)

CoexMap"5726525"


creCHLRE_07g314900v5 | Entrez gene ID : 5726525    
Species cre ath gma sly osa zma vvi ppo mtr ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 1 2 3 1 1 2 1 2 3 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000463 [list] [network] maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (11 genes)  IEA  
GO CC
GO:0005730 [list] [network] nucleolus  (152 genes)  IEA  
GO MF
GO:0003724 [list] [network] RNA helicase activity  (44 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (1223 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (1484 genes)  IEA  
Protein XP_042922433.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  cyto 2  (predict for XP_042922433.1)
Subcellular
localization
TargetP
other 8  (predict for XP_042922433.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_07g314900v5

.
ath-u.5
for
AT3G18600

.
ath-u.5
for
AT5G65900

.
gma-u.5
for
100798885

.
gma-u.5
for
100798290

.
gma-u.5
for
100797375

.
sly-u.5
for
101245343

.
osa-u.5
for
4334469

.
zma-u.5
for
100501728

.
zma-u.5
for
103640803

.
vvi-u.5
for
100242258

.
ppo-u.5
for
18102018

.
ppo-u.5
for
7468000

.
mtr-u.5
for
25486792

.
mtr-u.5
for
11441584

.
mtr-u.5
for
11438740

.


Ortholog ID: 3222
Species ath ath gma gma sly osa zma bra bra vvi ppo ppo mtr mtr hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT5G65900 AT3G18600 LOC100798290 LOC100798885 LOC101245343 LOC4334469 LOC100501728 LOC103837961 LOC103859759 LOC100242258 LOC18102018 LOC7468000 LOC11438740 LOC11441584 LOC123399846 LOC107926589 LOC107949736 LOC106412129 LOC106439550 CHLRE_07g314900v5 LOC8061145 LOC102597715 LOC102619669 LOC104584763 LOC107794494 LOC107806417
Function* DEA(D/H)-box RNA helicase family protein P-loop containing nucleoside triphosphate hydrolases superfamily protein DEAD-box ATP-dependent RNA helicase 27 DEAD-box ATP-dependent RNA helicase 27 DEAD-box ATP-dependent RNA helicase 51 DEAD-box ATP-dependent RNA helicase 27-like DEAD-box ATP-dependent RNA helicase 51 DEAD-box ATP-dependent RNA helicase 51 DEAD-box ATP-dependent RNA helicase 51 DEAD-box ATP-dependent RNA helicase 27 DEAD-box ATP-dependent RNA helicase 51-like DEAD-box ATP-dependent RNA helicase 51 DEAD-box ATP-dependent RNA helicase 51 DEAD-box ATP-dependent RNA helicase 27 DEAD-box ATP-dependent RNA helicase 27 DEAD-box ATP-dependent RNA helicase 51 DEAD-box ATP-dependent RNA helicase 51 DEAD-box ATP-dependent RNA helicase 51 DEAD-box ATP-dependent RNA helicase 51 uncharacterized protein DEAD-box ATP-dependent RNA helicase 27 DEAD-box ATP-dependent RNA helicase 51-like DEAD-box ATP-dependent RNA helicase 51 DEAD-box ATP-dependent RNA helicase 27 DEAD-box ATP-dependent RNA helicase 51 DEAD-box ATP-dependent RNA helicase 27
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 4
sly00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 4
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 3
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 836719 821391 100798290 100798885 101245343 4334469 100501728 103837961 103859759 100242258 18102018 7468000 11438740 11441584 123399846 107926589 107949736 106412129 106439550 5726525 8061145 102597715 102619669 104584763 107794494 107806417
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