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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_07g321650v5   uncharacterized protein 
 ath-u.5   RCY1   arginine-rich cyclin 1 
 gma-u.5   100820383   cyclin-L1-1-like 
 gma-u.5   100815690   cyclin-L1-1 
 sly-u.5   101252821   cyclin-L1-1 
 osa-u.5   4325450   cyclin-L1-1-like 
 zma-u.5   100283163   uncharacterized LOC100283163 
 zma-u.5   100382239   uncharacterized LOC100382239 
 vvi-u.5   100241975   cyclin-L1-1 
 vvi-u.5   104880255   uncharacterized LOC104880255 
 vvi-u.5   104878662   cyclin-L1-1-like 
 ppo-u.5   7457885   cyclin-L1-1 
 mtr-u.5   11430123   cyclin-L1-1 
 mtr-u.5   11420517   cyclin-L1-1 

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Top 50 coexpressed genes to CHLRE_07g321650v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_07g321650v5 (cre-r.1 coexpression data)

CoexMap"5726593"


creCHLRE_07g321650v5 | Entrez gene ID : 5726593    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 1 1 2 3 1 2 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (190 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO MF
GO:0016538 [list] [network] cyclin-dependent protein serine/threonine kinase regulator activity  (15 genes)  IEA  
Protein XP_001700855.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  cyto 1,  plas 1,  pero 1,  cyto_E.R. 1  (predict for XP_001700855.2)
Subcellular
localization
TargetP
other 9  (predict for XP_001700855.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_07g321650v5

.
ath-u.5
for
RCY1

.
gma-u.5
for
100820383

.
gma-u.5
for
100815690

.
sly-u.5
for
101252821

.
osa-u.5
for
4325450

.
zma-u.5
for
100283163

.
zma-u.5
for
100382239

.
vvi-u.5
for
100241975

.
vvi-u.5
for
104880255

.
vvi-u.5
for
104878662

.
ppo-u.5
for
7457885

.
mtr-u.5
for
11430123

.
mtr-u.5
for
11420517

.


Ortholog ID: 7927
Species ath gma gma sly osa zma zma bra vvi vvi ppo mtr mtr tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol RCY1 LOC100815690 LOC100820383 LOC101252821 LOC4325450 LOC100283163 LOC100382239 LOC103829119 LOC100241975 LOC104878662 LOC7457885 LOC11420517 LOC11430123 LOC543040 LOC123401952 LOC107930652 LOC107922601 LOC106358071 LOC106430649 CHLRE_07g321650v5 LOC110434873 LOC102586704 LOC102614657 LOC100830239 LOC107785812 LOC107766887
Function* arginine-rich cyclin 1 cyclin-L1-1 cyclin-L1-1-like cyclin-L1-1 cyclin-L1-1-like uncharacterized LOC100283163 uncharacterized LOC100382239 cyclin-L1-1 cyclin-L1-1 cyclin-L1-1-like cyclin-L1-1 cyclin-L1-1 cyclin-L1-1 uncharacterized LOC543040 cyclin-L1-1 cyclin-L1-1 cyclin-L1-1 cyclin-L1-1 cyclin-L1-1-like uncharacterized protein cyclin-L1-1 cyclin-L1-1 cyclin-L1-1 cyclin-L1-1 cyclin-L1-1 cyclin-L1-1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma03250 Viral life cycle - HIV-1 3
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 8
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 3
hvu04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 4
ghi03420 Nucleotide excision repair 2
ghi03460 Fanconi anemia pathway 2
ghi03020 RNA polymerase 2
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 4
ghi03420 Nucleotide excision repair 2
ghi03460 Fanconi anemia pathway 2
ghi03020 RNA polymerase 2
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 2
cre00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04141 Protein processing in endoplasmic reticulum 4
bdi03060 Protein export 2
bdi00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 4
nta03040 Spliceosome 2
nta04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 4
nta03250 Viral life cycle - HIV-1 2
nta03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 817183 100815690 100820383 101252821 4325450 100283163 100382239 103829119 100241975 104878662 7457885 11420517 11430123 543040 123401952 107930652 107922601 106358071 106430649 5726593 110434873 102586704 102614657 100830239 107785812 107766887
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