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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_06g295200v5   uncharacterized protein 
 ath-u.5   CRY1   cryptochrome 1 
 ath-u.5   CRY2   cryptochrome 2 
 gma-u.5   CRY1a   cryptochrome 1 
 gma-u.5   100786551   cryptochrome-1-like 
 gma-u.5   100808627   cryptochrome-2-like 
 sly-u.5   CRY2   cryptochrome 2 
 sly-u.5   CRY1a   cryptochrome 1 
 sly-u.5   Cry1b   cryptochrome 1b 
 osa-u.5   9270575   cryptochrome-1 
 osa-u.5   4336008   cryptochrome-1 
 osa-u.5   4329738   cryptochrome-1 
 zma-u.5   100502533   cryptochrome 2 
 zma-u.5   100194126   cryptochrome2 
 vvi-u.5   100254022   cryptochrome-1 
 vvi-u.5   100247664   cryptochrome-1 
 ppo-u.5   18102473   cryptochrome-1 
 ppo-u.5   7495156   cryptochrome-1 
 ppo-u.5   7486597   cryptochrome-1 
 mtr-u.5   25484452   cryptochrome-1 
 mtr-u.5   11428875   cryptochrome-1 
 mtr-u.5   11418875   cryptochrome-1 

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Top 50 coexpressed genes to CHLRE_06g295200v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_06g295200v5 (cre-r.1 coexpression data)

CoexMap"5727125"


creCHLRE_06g295200v5 | Entrez gene ID : 5727125      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 2 3 3 3 2 2 3 3 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0043153 [list] [network] entrainment of circadian clock by photoperiod  (2 genes)  IEA  
GO:0032922 [list] [network] circadian regulation of gene expression  (3 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (2907 genes)  IEA  
GO MF
GO:0071949 [list] [network] FAD binding  (46 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (670 genes)  IEA  
Protein XP_001701553.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  E.R. 3,  cyto_nucl 3  (predict for XP_001701553.1)
Subcellular
localization
TargetP
other 5  (predict for XP_001701553.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_06g295200v5

.
ath-u.5
for
CRY1

.
ath-u.5
for
CRY2

.
gma-u.5
for
CRY1a

.
gma-u.5
for
100786551

.
gma-u.5
for
100808627

.
sly-u.5
for
CRY2

.
sly-u.5
for
CRY1a

.
sly-u.5
for
Cry1b

.
osa-u.5
for
9270575

.
osa-u.5
for
4336008

.
osa-u.5
for
4329738

.
zma-u.5
for
100502533

.
zma-u.5
for
100194126

.
vvi-u.5
for
100254022

.
vvi-u.5
for
100247664

.
ppo-u.5
for
18102473

.
ppo-u.5
for
7495156

.
ppo-u.5
for
7486597

.
mtr-u.5
for
25484452

.
mtr-u.5
for
11428875

.
mtr-u.5
for
11418875

.


Ortholog ID: 1712
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol CRY1 CRY2 CRY1a LOC100233234 CRY2 Cry1b LOC4329738 LOC9270575 LOC100502533 LOC100277533 CRY1 LOC103836576 LOC100254022 LOC100247664 LOC7486597 LOC18102473 LOC11428875 LOC25484452 LOC100136971 LOC100136972 LOC123426879 LOC123406235 LOC107929100 LOC107905111 LOC111197715 LOC106422131 CHLRE_06g295200v5 LOC110436666 LOC110435145 LOC102580483 LOC102583141 LOC102630424 LOC102609249 LOC100839051 LOC100838321 LOC107813393 LOC107830603
Function* cryptochrome 1 cryptochrome 2 cryptochrome 1 cryptochrome 2 cryptochrome 2 cryptochrome 1b cryptochrome-1 cryptochrome-1 cryptochrome 2 uncharacterized LOC100277533 cryptochrome circadian clock 1 cryptochrome-2 cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome-1-like cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome-2 cryptochrome-1 uncharacterized protein cryptochrome-1-like cryptochrome-1-like cryptochrome-1-like cryptochrome-1-like cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome-1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00860 Porphyrin metabolism 4
ath00900 Terpenoid backbone biosynthesis 3
ath04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00500 Starch and sucrose metabolism 4
ath04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 3
sly00195 Photosynthesis 3
sly00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04712 Circadian rhythm - plant 2
vvi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04148 Efferocytosis 2
vvi00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00280 Valine, leucine and isoleucine degradation 2
ppo00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 8
tae00053 Ascorbate and aldarate metabolism 3
tae01240 Biosynthesis of cofactors 3
tae04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 4
ghi00062 Fatty acid elongation 2
ghi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 2
bna04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04712 Circadian rhythm - plant 3
sot00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04712 Circadian rhythm - plant 2
sot01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00630 Glyoxylate and dicarboxylate metabolism 5
bdi01200 Carbon metabolism 5
bdi04712 Circadian rhythm - plant 2
bdi00710 Carbon fixation by Calvin cycle 2
bdi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 3
bdi04120 Ubiquitin mediated proteolysis 2
bdi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00562 Inositol phosphate metabolism 4
nta04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00562 Inositol phosphate metabolism 4
nta04712 Circadian rhythm - plant 2
nta04144 Endocytosis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 826470 839529 100233233 100233234 543596 543688 4329738 9270575 100502533 100277533 103838805 103836576 100254022 100247664 7486597 18102473 11428875 25484452 100136971 100136972 123426879 123406235 107929100 107905111 111197715 106422131 5727125 110436666 110435145 102580483 102583141 102630424 102609249 100839051 100838321 107813393 107830603
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