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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_02g075150v5   uncharacterized protein 
 ath-u.5   NRPB2   DNA-directed RNA polymerase family protein 
 gma-u.5   100810288   DNA-directed RNA polymerase II subunit RPB2 
 gma-u.5   100790162   DNA-directed RNA polymerase II subunit RPB2 
 sly-u.5   rpb2   RNA polymerase II subunit 2 
 sly-u.5   RPB2-2   RNA polymerase II second largest subunit 
 osa-u.5   4333571   DNA-directed RNA polymerase II subunit RPB2 
 zma-u.5   100277195   uncharacterized LOC100277195 
 zma-u.5   103626041   DNA-directed RNA polymerase II subunit RPB2 
 vvi-u.5   100252267   DNA-directed RNA polymerase II subunit RPB2-like 
 ppo-u.5   7477407   DNA-directed RNA polymerase II subunit RPB2 
 mtr-u.5   11428063   DNA-directed RNA polymerase II subunit RPB2 

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Top 50 coexpressed genes to CHLRE_02g075150v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_02g075150v5 (cre-r.1 coexpression data)

CoexMap"5727192"


creCHLRE_02g075150v5 | Entrez gene ID : 5727192      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 2 1 2 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03020 [list] [network] RNA polymerase (29 genes)
cre03420 [list] [network] Nucleotide excision repair (42 genes)
GO BP
GO:0006351 [list] [network] DNA-templated transcription  (95 genes)  IEA  
GO CC
GO:0005665 [list] [network] RNA polymerase II, core complex  (12 genes)  IEA  
GO MF
GO:0032549 [list] [network] ribonucleoside binding  (3 genes)  IEA  
GO:0003899 [list] [network] DNA-directed RNA polymerase activity  (16 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (670 genes)  IEA  
Protein XP_042926767.1 [sequence] [blastp]
XP_042926768.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 4,  cyto_nucl 4  (predict for XP_042926767.1)
nucl 4,  cyto 4,  cyto_nucl 4  (predict for XP_042926768.1)
Subcellular
localization
TargetP
other 9  (predict for XP_042926767.1)
other 9  (predict for XP_042926768.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_02g075150v5

.
ath-u.5
for
NRPB2

.
gma-u.5
for
100810288

.
gma-u.5
for
100790162

.
sly-u.5
for
rpb2

.
sly-u.5
for
RPB2-2

.
osa-u.5
for
4333571

.
zma-u.5
for
100277195

.
zma-u.5
for
103626041

.
vvi-u.5
for
100252267

.
ppo-u.5
for
7477407

.
mtr-u.5
for
11428063

.


Ortholog ID: 5805
Species ath gma gma sly sly osa zma zma bra bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi
Symbol NRPB2 LOC100810288 LOC100790162 rpb2 RPB2-2 LOC4333571 LOC103626041 LOC100277195 LOC103834177 LOC103834217 LOC100252267 LOC7477407 LOC11428063 LOC123122719 LOC123113196 LOC123452107 LOC121230897 LOC107960207 LOC111213393 LOC106401389 CHLRE_02g075150v5 LOC8062207 LOC102592899 LOC102617803 LOC100838357
Function* DNA-directed RNA polymerase family protein DNA-directed RNA polymerase II subunit RPB2 DNA-directed RNA polymerase II subunit RPB2 RNA polymerase II subunit 2 RNA polymerase II second largest subunit DNA-directed RNA polymerase II subunit RPB2 DNA-directed RNA polymerase II subunit RPB2 uncharacterized LOC100277195 DNA-directed RNA polymerase II subunit 2-like DNA-directed RNA polymerase II subunit 2 DNA-directed RNA polymerase II subunit RPB2-like DNA-directed RNA polymerase II subunit RPB2 DNA-directed RNA polymerase II subunit RPB2 DNA-directed RNA polymerase II subunit RPB2 DNA-directed RNA polymerase II subunit RPB2 DNA-directed RNA polymerase II subunit RPB2 DNA-directed RNA polymerase II subunit RPB2 DNA-directed RNA polymerase II subunit RPB2 DNA-directed RNA polymerase II subunit 2 DNA-directed RNA polymerase II subunit 2 uncharacterized protein DNA-directed RNA polymerase II subunit RPB2 DNA-directed RNA polymerase II subunit RPB2 DNA-directed RNA polymerase II subunit RPB2 DNA-directed RNA polymerase II subunit RPB2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
ath03082 ATP-dependent chromatin remodeling 2
ath03420 Nucleotide excision repair 2
ath04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma03420 Nucleotide excision repair 4
gma04120 Ubiquitin mediated proteolysis 3
gma03020 RNA polymerase 2
gma04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 5
gma03420 Nucleotide excision repair 4
gma03040 Spliceosome 3
gma03020 RNA polymerase 2
gma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
sly03013 Nucleocytoplasmic transport 4
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04144 Endocytosis 2
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
zma03020 RNA polymerase 2
zma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
zma03420 Nucleotide excision repair 3
zma03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01240 Biosynthesis of cofactors 2
bra03020 RNA polymerase 2
bra03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01240 Biosynthesis of cofactors 2
bra03020 RNA polymerase 2
bra03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 2
ppo03420 Nucleotide excision repair 2
ppo03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03083 Polycomb repressive complex 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 4
ghi03420 Nucleotide excision repair 3
ghi00460 Cyanoamino acid metabolism 3
ghi00500 Starch and sucrose metabolism 3
ghi00999 Biosynthesis of various plant secondary metabolites 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 4
ghi03420 Nucleotide excision repair 3
ghi03020 RNA polymerase 2
ghi03040 Spliceosome 2
ghi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03420 Nucleotide excision repair 8
bna03020 RNA polymerase 6
bna03013 Nucleocytoplasmic transport 3
bna00020 Citrate cycle (TCA cycle) 2
bna00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03420 Nucleotide excision repair 8
bna03020 RNA polymerase 6
bna03013 Nucleocytoplasmic transport 3
bna00020 Citrate cycle (TCA cycle) 2
bna00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 6
cre03020 RNA polymerase 2
cre03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04142 Lysosome 5
sot04144 Endocytosis 5
sot04141 Protein processing in endoplasmic reticulum 3
sot05100 Bacterial invasion of epithelial cells 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 9
bdi03020 RNA polymerase 3
bdi03013 Nucleocytoplasmic transport 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 828259 100810288 100790162 544278 100736502 4333571 103626041 100277195 103834177 103834217 100252267 7477407 11428063 123122719 123113196 123452107 121230897 107960207 111213393 106401389 5727192 8062207 102592899 102617803 100838357
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