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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_02g082000v5   uncharacterized protein 
 ath-u.5   AT4G12740   HhH-GPD base excision DNA repair family protein 
 gma-u.5   100818278   adenine DNA glycosylase 
 sly-u.5   101262147   adenine DNA glycosylase 
 osa-u.5   9269803   adenine DNA glycosylase 
 zma-u.5   100284112   A/G-specific adenine DNA glycosylase 
 vvi-u.5   100265491   adenine DNA glycosylase 
 ppo-u.5   112324058   adenine DNA glycosylase 
 mtr-u.5   25500763   adenine DNA glycosylase 

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Top 50 coexpressed genes to CHLRE_02g082000v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_02g082000v5 (cre-r.1 coexpression data)

CoexMap"5727320"


creCHLRE_02g082000v5 | Entrez gene ID : 5727320      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03410 [list] [network] Base excision repair (25 genes)
GO BP
GO:0006284 [list] [network] base-excision repair  (17 genes)  IEA  
GO:0006298 [list] [network] mismatch repair  (17 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO MF
GO:0000701 [list] [network] purine-specific mismatch base pair DNA N-glycosylase activity  (1 genes)  IEA  
GO:0032357 [list] [network] oxidized purine DNA binding  (1 genes)  IEA  
GO:0035485 [list] [network] adenine/guanine mispair binding  (1 genes)  IEA  
GO:0034039 [list] [network] 8-oxo-7,8-dihydroguanine DNA N-glycosylase activity  (2 genes)  IEA  
Protein XP_001701896.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  chlo 2,  nucl 1,  mito 1  (predict for XP_001701896.1)
Subcellular
localization
TargetP
other 9  (predict for XP_001701896.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_02g082000v5

.
ath-u.5
for
AT4G12740

.
gma-u.5
for
100818278

.
sly-u.5
for
101262147

.
osa-u.5
for
9269803

.
zma-u.5
for
100284112

.
vvi-u.5
for
100265491

.
ppo-u.5
for
112324058

.
mtr-u.5
for
25500763

.


Ortholog ID: 9566
Species ath gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT4G12740 LOC100818278 LOC101262147 LOC9269803 LOC100284112 LOC103849063 LOC100265491 LOC112324058 LOC25500763 LOC123161434 LOC123148385 LOC123411586 LOC107933999 LOC107954018 LOC106397715 LOC106385365 CHLRE_02g082000v5 LOC8084199 LOC102598353 LOC102622215 LOC100830675 LOC107781660 LOC107809776
Function* HhH-GPD base excision DNA repair family protein adenine DNA glycosylase adenine DNA glycosylase adenine DNA glycosylase A/G-specific adenine DNA glycosylase adenine DNA glycosylase adenine DNA glycosylase adenine DNA glycosylase adenine DNA glycosylase adenine DNA glycosylase adenine DNA glycosylase adenine DNA glycosylase adenine DNA glycosylase adenine DNA glycosylase adenine DNA glycosylase adenine DNA glycosylase-like uncharacterized protein adenine DNA glycosylase A/G-specific adenine DNA glycosylase adenine DNA glycosylase adenine DNA glycosylase adenine DNA glycosylase-like adenine DNA glycosylase-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 3
gma03013 Nucleocytoplasmic transport 3
gma03410 Base excision repair 2
gma04144 Endocytosis 2
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03440 Homologous recombination 2
sly03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03410 Base excision repair 3
zma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 5
vvi03410 Base excision repair 2
vvi03030 DNA replication 2
vvi03420 Nucleotide excision repair 2
vvi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03030 DNA replication 3
ppo03440 Homologous recombination 3
ppo03420 Nucleotide excision repair 2
ppo03430 Mismatch repair 2
ppo03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04814 Motor proteins 4
mtr00905 Brassinosteroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03083 Polycomb repressive complex 4
tae03410 Base excision repair 4
tae03082 ATP-dependent chromatin remodeling 3
tae03030 DNA replication 3
tae00230 Purine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03410 Base excision repair 7
tae03030 DNA replication 5
tae03420 Nucleotide excision repair 5
tae03430 Mismatch repair 5
tae03083 Polycomb repressive complex 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04814 Motor proteins 3
ghi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 11
bna03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 11
bna03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 6
cre03410 Base excision repair 5
cre03420 Nucleotide excision repair 4
cre03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 5
sbi03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00230 Purine metabolism 2
sot00240 Pyrimidine metabolism 2
sot00480 Glutathione metabolism 2
sot01232 Nucleotide metabolism 2
sot00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04814 Motor proteins 4
nta03460 Fanconi anemia pathway 2
nta03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03460 Fanconi anemia pathway 2
nta03430 Mismatch repair 2
nta03410 Base excision repair 2
nta03440 Homologous recombination 2
nta04814 Motor proteins 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 826886 100818278 101262147 9269803 100284112 103849063 100265491 112324058 25500763 123161434 123148385 123411586 107933999 107954018 106397715 106385365 5727320 8084199 102598353 102622215 100830675 107781660 107809776
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