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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_02g091550v5   uncharacterized protein 
 ath-u.5   WHY3   ssDNA-binding transcriptional regulator 
 ath-u.5   WHY1   ssDNA-binding transcriptional regulator 
 ath-u.5   ATWHY2   WHIRLY 2 
 gma-u.5   100775220   single-stranded DNA-binding protein WHY1, chloroplastic 
 gma-u.5   100789252   single-stranded DNA-binding protein WHY1, chloroplastic 
 gma-u.5   100797370   single-stranded DNA-binding protein WHY1, chloroplastic 
 sly-u.5   WHY1   DNA-binding protein WHY1 
 sly-u.5   101252048   mtDNA-binding protein WHIRLY2-like 
 osa-u.5   4340109   single-stranded DNA-binding protein WHY1, chloroplastic 
 osa-u.5   4328365   single-stranded DNA-binding protein WHY2, mitochondrial 
 zma-u.5   100286229   uncharacterized LOC100286229 
 vvi-u.5   100253653   single-stranded DNA-binding protein WHY1, chloroplastic 
 vvi-u.5   100258449   single-stranded DNA-binding protein WHY2, mitochondrial 
 ppo-u.5   7457857   single-stranded DNA-binding protein WHY1, chloroplastic 
 ppo-u.5   7483546   single-stranded DNA-binding protein WHY2, mitochondrial 
 ppo-u.5   7459041   single-stranded DNA-binding protein WHY1, chloroplastic 
 mtr-u.5   11433338   single-stranded DNA-binding protein WHY2, mitochondrial 
 mtr-u.5   25502758   single-stranded DNA-binding protein WHY1, chloroplastic 
 mtr-u.5   11413967   single-stranded DNA-binding protein WHY1, chloroplastic 

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Top 50 coexpressed genes to CHLRE_02g091550v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_02g091550v5 (cre-r.1 coexpression data)

CoexMap"5727487"


creCHLRE_02g091550v5 | Entrez gene ID : 5727487      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 3 3 2 2 1 2 3 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006952 [list] [network] defense response  (12 genes)  IEA  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (405 genes)  IEA  
GO CC
GO MF
GO:0003697 [list] [network] single-stranded DNA binding  (46 genes)  IEA  
Protein XP_001701785.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 10  (predict for XP_001701785.1)
Subcellular
localization
TargetP
chlo 4,  mito 4  (predict for XP_001701785.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_02g091550v5

.
ath-u.5
for
WHY3

.
ath-u.5
for
WHY1

.
ath-u.5
for
ATWHY2

.
gma-u.5
for
100775220

.
gma-u.5
for
100789252

.
gma-u.5
for
100797370

.
sly-u.5
for
WHY1

.
sly-u.5
for
101252048

.
osa-u.5
for
4340109

.
osa-u.5
for
4328365

.
zma-u.5
for
100286229

.
vvi-u.5
for
100253653

.
vvi-u.5
for
100258449

.
ppo-u.5
for
7457857

.
ppo-u.5
for
7483546

.
ppo-u.5
for
7459041

.
mtr-u.5
for
11433338

.
mtr-u.5
for
25502758

.
mtr-u.5
for
11413967

.


Ortholog ID: 2528
Species ath ath gma gma sly sly osa osa zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol WHY1 ATWHY2 LOC100789252 LOC100775220 WHY1 LOC101252048 LOC4340109 LOC4328365 LOC100286229 LOC103827509 LOC103831651 LOC100258449 LOC100253653 LOC7457857 LOC7483546 LOC25502758 LOC11433338 LOC123150714 LOC123136394 LOC123401117 LOC123410098 LOC107909129 LOC107894079 LOC106407445 LOC106369337 CHLRE_02g091550v5 LOC8068770 LOC8074659 LOC102577544 LOC102577630 LOC102610089 LOC102613455 LOC100824321 LOC100825843 LOC107825932 LOC107828401
Function* ssDNA-binding transcriptional regulator WHIRLY 2 single-stranded DNA-binding protein WHY1, chloroplastic single-stranded DNA-binding protein WHY1, chloroplastic DNA-binding protein WHY1 mtDNA-binding protein WHIRLY2-like single-stranded DNA-binding protein WHY1, chloroplastic single-stranded DNA-binding protein WHY2, mitochondrial uncharacterized LOC100286229 single-stranded DNA-binding protein WHY3, chloroplastic single-stranded DNA-binding protein WHY2, mitochondrial single-stranded DNA-binding protein WHY2, mitochondrial single-stranded DNA-binding protein WHY1, chloroplastic single-stranded DNA-binding protein WHY1, chloroplastic single-stranded DNA-binding protein WHY2, mitochondrial single-stranded DNA-binding protein WHY1, chloroplastic single-stranded DNA-binding protein WHY2, mitochondrial single-stranded DNA-binding protein WHY1, chloroplastic single-stranded DNA-binding protein WHY2, mitochondrial single-stranded DNA-binding protein WHY2, mitochondrial single-stranded DNA-binding protein WHY1, chloroplastic-like single-stranded DNA-binding protein WHY2, mitochondrial single-stranded DNA-binding protein WHY1, chloroplastic single-stranded DNA-binding protein WHY3, chloroplastic-like single-stranded DNA-binding protein WHY3, chloroplastic uncharacterized protein single-stranded DNA-binding protein WHY1, chloroplastic single-stranded DNA-binding protein WHY2, mitochondrial DNA-binding protein p24 Why2 protein single-stranded DNA-binding protein WHY1, chloroplastic single-stranded DNA-binding protein WHY2, mitochondrial single-stranded DNA-binding protein WHY1, chloroplastic single-stranded DNA-binding protein WHY2, mitochondrial single-stranded DNA-binding protein WHY2, mitochondrial single-stranded DNA-binding protein WHY2, mitochondrial
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00340 Histidine metabolism 2
ath00350 Tyrosine metabolism 2
ath00360 Phenylalanine metabolism 2
ath00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
ath00960 Tropane, piperidine and pyridine alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 6
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00061 Fatty acid biosynthesis 2
gma00620 Pyruvate metabolism 2
gma00640 Propanoate metabolism 2
gma01200 Carbon metabolism 2
gma01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04141 Protein processing in endoplasmic reticulum 2
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 5
osa03030 DNA replication 2
osa03410 Base excision repair 2
osa03082 ATP-dependent chromatin remodeling 2
osa03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03082 ATP-dependent chromatin remodeling 3
zma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00860 Porphyrin metabolism 2
vvi01240 Biosynthesis of cofactors 2
vvi01210 2-Oxocarboxylic acid metabolism 2
vvi01230 Biosynthesis of amino acids 2
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 3
ppo01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 3
ppo00300 Lysine biosynthesis 2
ppo00470 D-Amino acid metabolism 2
ppo01230 Biosynthesis of amino acids 2
ppo00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00261 Monobactam biosynthesis 2
tae00300 Lysine biosynthesis 2
tae01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 6
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04142 Lysosome 2
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 2
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00270 Cysteine and methionine metabolism 2
bna01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00270 Cysteine and methionine metabolism 2
bna01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 4
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 4
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 6
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 3
bdi00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 11
nta03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 5
nta03040 Spliceosome 3
nta03013 Nucleocytoplasmic transport 2
nta03030 DNA replication 2
nta03410 Base excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 838003 843467 100789252 100775220 101258558 101252048 4340109 4328365 100286229 103827509 103831651 100258449 100253653 7457857 7483546 25502758 11433338 123150714 123136394 123401117 123410098 107909129 107894079 106407445 106369337 5727487 8068770 8074659 102577544 102577630 102610089 102613455 100824321 100825843 107825932 107828401
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