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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_11g475450v5   uncharacterized protein 
 ath-u.5   AT3G54130   Josephin family protein 
 gma-u.5   100808056   ataxin-3 homolog 
 gma-u.5   100776098   ataxin-3 homolog 
 osa-u.5   4324808   putative ataxin-3 homolog 
 zma-u.5   100273270   Ataxin-3-like protein 
 zma-u.5   100283523   uncharacterized LOC100283523 
 vvi-u.5   100249311   ataxin-3 homolog 
 ppo-u.5   7466041   ataxin-3 homolog 
 ppo-u.5   7468037   ataxin-3 homolog 
 mtr-u.5   11428042   ataxin-3 homolog 

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Top 50 coexpressed genes to CHLRE_11g475450v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_11g475450v5 (cre-r.1 coexpression data)

CoexMap"5727563"


creCHLRE_11g475450v5 | Entrez gene ID : 5727563      
Species cre ath gma osa zma vvi ppo mtr sly sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 1 2 1 2 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre04141 [list] [network] Protein processing in endoplasmic reticulum (76 genes)
GO BP
GO:0016579 [list] [network] protein deubiquitination  (65 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO MF
GO:0004843 [list] [network] cysteine-type deubiquitinase activity  (41 genes)  IEA  
GO:0005515 [list] [network] protein binding  (1927 genes)  IEA  
Protein XP_042919620.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  chlo 2,  cyto_E.R. 2,  extr 1,  pero 1,  chlo_mito 1  (predict for XP_042919620.1)
Subcellular
localization
TargetP
scret 5  (predict for XP_042919620.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_11g475450v5

.
ath-u.5
for
AT3G54130

.
gma-u.5
for
100808056

.
gma-u.5
for
100776098

.
osa-u.5
for
4324808

.
zma-u.5
for
100273270

.
zma-u.5
for
100283523

.
vvi-u.5
for
100249311

.
ppo-u.5
for
7466041

.
ppo-u.5
for
7468037

.
mtr-u.5
for
11428042

.


Ortholog ID: 6289
Species ath gma gma osa zma zma bra bra vvi ppo ppo mtr tae tae hvu hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT3G54130 LOC100808056 LOC100776098 LOC4324808 LOC100273270 LOC100283523 LOC103841330 LOC103863262 LOC100249311 LOC7468037 LOC7466041 LOC11428042 LOC123135528 LOC123062615 LOC123444880 LOC123445759 LOC107898125 LOC107958033 LOC106421517 LOC106411806 CHLRE_11g475450v5 LOC8058916 LOC102589779 LOC102608142 LOC100827657 LOC107770203 LOC107816411
Function* Josephin family protein ataxin-3 homolog ataxin-3 homolog putative ataxin-3 homolog Ataxin-3-like protein uncharacterized LOC100283523 ataxin-3 homolog ataxin-3 homolog ataxin-3 homolog ataxin-3 homolog ataxin-3 homolog ataxin-3 homolog ataxin-3 homolog putative ataxin-3 homolog putative ataxin-3 homolog ataxin-3 homolog ataxin-3 homolog ataxin-3 homolog ataxin-3 homolog ataxin-3 homolog uncharacterized protein putative ataxin-3 homolog ataxin-3 homolog ataxin-3 homolog putative ataxin-3 homolog ataxin-3 homolog ataxin-3 homolog
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 2
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04144 Endocytosis 2
osa04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 4
bra03013 Nucleocytoplasmic transport 3
bra03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00010 Glycolysis / Gluconeogenesis 3
tae01200 Carbon metabolism 3
tae01230 Biosynthesis of amino acids 3
tae03018 RNA degradation 3
tae04820 Cytoskeleton in muscle cells 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 5
tae04141 Protein processing in endoplasmic reticulum 4
tae03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 3
hvu04141 Protein processing in endoplasmic reticulum 2
hvu03013 Nucleocytoplasmic transport 2
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04141 Protein processing in endoplasmic reticulum 5
ghi00010 Glycolysis / Gluconeogenesis 4
ghi00620 Pyruvate metabolism 4
ghi01200 Carbon metabolism 4
ghi01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 3
bna02010 ABC transporters 2
bna04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 5
bna02010 ABC transporters 2
bna04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00190 Oxidative phosphorylation 8
sot00020 Citrate cycle (TCA cycle) 3
sot01200 Carbon metabolism 3
sot01210 2-Oxocarboxylic acid metabolism 3
sot01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 11
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 5
nta00040 Pentose and glucuronate interconversions 2
nta00053 Ascorbate and aldarate metabolism 2
nta00520 Amino sugar and nucleotide sugar metabolism 2
nta01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 6
nta03013 Nucleocytoplasmic transport 4
nta00040 Pentose and glucuronate interconversions 2
nta00053 Ascorbate and aldarate metabolism 2
nta00520 Amino sugar and nucleotide sugar metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824580 100808056 100776098 4324808 100273270 100283523 103841330 103863262 100249311 7468037 7466041 11428042 123135528 123062615 123444880 123445759 107898125 107958033 106421517 106411806 5727563 8058916 102589779 102608142 100827657 107770203 107816411
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