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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_10g433750v5   uncharacterized protein 
 ath-u.5   PAPS2   poly(A) polymerase 2 
 ath-u.5   nPAP   nuclear poly(a) polymerase 
 ath-u.5   PAPS1   poly(A) polymerase 1 
 gma-u.5   100819294   nuclear poly(A) polymerase 4 
 gma-u.5   100816915   nuclear poly(A) polymerase 1 
 gma-u.5   100815801   nuclear poly(A) polymerase 1 
 sly-u.5   101247241   nuclear poly(A) polymerase 4-like 
 sly-u.5   101266027   nuclear poly(A) polymerase 1 
 sly-u.5   101268462   nuclear poly(A) polymerase 4 
 osa-u.5   9268632   nuclear poly(A) polymerase 4 
 osa-u.5   4328790   nuclear poly(A) polymerase 4 
 osa-u.5   4340886   nuclear poly(A) polymerase 1 
 zma-u.5   100280371   Nuclear poly(A) polymerase 2 
 zma-u.5   100382126   uncharacterized LOC100382126 
 vvi-u.5   100252483   nuclear poly(A) polymerase 1 
 vvi-u.5   100263460   nuclear poly(A) polymerase 4 
 vvi-u.5   100268087   nuclear poly(A) polymerase 1 
 ppo-u.5   7463733   nuclear poly(A) polymerase 4 
 ppo-u.5   7462286   nuclear poly(A) polymerase 4 
 ppo-u.5   7453892   nuclear poly(A) polymerase 1 
 mtr-u.5   11414390   nuclear poly(A) polymerase 1 
 mtr-u.5   11422260   nuclear poly(A) polymerase 1 
 mtr-u.5   11434036   nuclear poly(A) polymerase 4 

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Top 50 coexpressed genes to CHLRE_10g433750v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_10g433750v5 (cre-r.1 coexpression data)

CoexMap"5728026"


creCHLRE_10g433750v5 | Entrez gene ID : 5728026      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 3 3 3 3 2 3 3 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03015 [list] [network] mRNA surveillance pathway (40 genes)
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO MF
GO:1990817 [list] [network] poly(A) RNA polymerase activity  (5 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (670 genes)  IEA  
Protein XP_001702656.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  nucl 2,  chlo 1,  plas 1,  pero 1  (predict for XP_001702656.2)
Subcellular
localization
TargetP
other 7  (predict for XP_001702656.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_10g433750v5

.
ath-u.5
for
PAPS2

.
ath-u.5
for
nPAP

.
ath-u.5
for
PAPS1

.
gma-u.5
for
100819294

.
gma-u.5
for
100816915

.
gma-u.5
for
100815801

.
sly-u.5
for
101247241

.
sly-u.5
for
101266027

.
sly-u.5
for
101268462

.
osa-u.5
for
9268632

.
osa-u.5
for
4328790

.
osa-u.5
for
4340886

.
zma-u.5
for
100280371

.
zma-u.5
for
100382126

.
vvi-u.5
for
100252483

.
vvi-u.5
for
100263460

.
vvi-u.5
for
100268087

.
ppo-u.5
for
7463733

.
ppo-u.5
for
7462286

.
ppo-u.5
for
7453892

.
mtr-u.5
for
11414390

.
mtr-u.5
for
11422260

.
mtr-u.5
for
11434036

.


Ortholog ID: 1121
Species ath ath gma gma sly sly osa osa zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol PAPS2 PAPS1 LOC100798218 LOC100816915 LOC101247241 LOC101266027 LOC4328790 LOC4340886 LOC100274689 LOC103835928 LOC103864694 LOC100263460 LOC100268087 LOC7463733 LOC7462286 LOC11422260 LOC11434036 LOC123137056 LOC123086936 LOC123404828 LOC123410067 LOC107891713 LOC107898378 LOC106369039 CHLRE_10g433750v5 LOC8061974 LOC8085547 LOC102594846 LOC102600244 LOC102613009 LOC102621281 LOC100823067 LOC100827786 LOC107762435 LOC107778577
Function* poly(A) polymerase 2 poly(A) polymerase 1 nuclear poly(A) polymerase 4 nuclear poly(A) polymerase 1 nuclear poly(A) polymerase 4-like nuclear poly(A) polymerase 1 nuclear poly(A) polymerase 4 nuclear poly(A) polymerase 1 uncharacterized LOC100274689 nuclear poly(A) polymerase 1 nuclear poly(A) polymerase 2 nuclear poly(A) polymerase 4 nuclear poly(A) polymerase 1 nuclear poly(A) polymerase 4 nuclear poly(A) polymerase 4 nuclear poly(A) polymerase 1 nuclear poly(A) polymerase 4 nuclear poly(A) polymerase 4 nuclear poly(A) polymerase 1 nuclear poly(A) polymerase 4-like nuclear poly(A) polymerase 4-like nuclear poly(A) polymerase 4 nuclear poly(A) polymerase 1 nuclear poly(A) polymerase 1 uncharacterized protein nuclear poly(A) polymerase 4 nuclear poly(A) polymerase 4 nuclear poly(A) polymerase 1 nuclear poly(A) polymerase 4-like nuclear poly(A) polymerase 4-like nuclear poly(A) polymerase 4-like nuclear poly(A) polymerase 4 nuclear poly(A) polymerase 1 nuclear poly(A) polymerase 1 nuclear poly(A) polymerase 4-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath04626 Plant-pathogen interaction 2
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 5
zma03013 Nucleocytoplasmic transport 3
zma03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 3
bra03083 Polycomb repressive complex 2
bra03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 2
vvi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 9
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 3
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 7
ghi00730 Thiamine metabolism 2
ghi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04141 Protein processing in endoplasmic reticulum 8
cre03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 2
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04144 Endocytosis 2
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 2
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 4
bdi03015 mRNA surveillance pathway 2
bdi02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 3
bdi03015 mRNA surveillance pathway 2
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 4
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 817127 838378 100798218 100816915 101247241 101266027 4328790 4340886 100274689 103835928 103864694 100263460 100268087 7463733 7462286 11422260 11434036 123137056 123086936 123404828 123410067 107891713 107898378 106369039 5728026 8061974 8085547 102594846 102600244 102613009 102621281 100823067 100827786 107762435 107778577
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