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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_10g432650v5   uncharacterized protein 
 ath-u.5   APTX   APRATAXIN-like protein 
 gma-u.5   100786762   transcription factor bHLH140 
 sly-u.5   101257206   transcription factor bHLH140 
 osa-u.5   4332518   transcription factor bHLH140 
 zma-u.5   103634500   transcription factor bHLH140 
 vvi-u.5   100259037   transcription factor bHLH140 
 ppo-u.5   7460370   transcription factor bHLH140 
 mtr-u.5   11415306   transcription factor bHLH140 

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Top 50 coexpressed genes to CHLRE_10g432650v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_10g432650v5 (cre-r.1 coexpression data)

CoexMap"5728047"


creCHLRE_10g432650v5 | Entrez gene ID : 5728047      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03018 [list] [network] RNA degradation (48 genes)
GO BP
GO:0000290 [list] [network] deadenylation-dependent decapping of nuclear-transcribed mRNA  (5 genes)  IEA  
GO CC
GO:0000932 [list] [network] P-body  (23 genes)  IEA  
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO MF
GO:0000340 [list] [network] RNA 7-methylguanosine cap binding  (3 genes)  IEA  
GO:0016787 [list] [network] hydrolase activity  (1498 genes)  IEA  
Protein XP_042920066.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  chlo 1,  nucl 1,  extr 1,  chlo_mito 1,  E.R._vacu 1  (predict for XP_042920066.1)
Subcellular
localization
TargetP
other 7  (predict for XP_042920066.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_10g432650v5

.
ath-u.5
for
APTX

.
gma-u.5
for
100786762

.
sly-u.5
for
101257206

.
osa-u.5
for
4332518

.
zma-u.5
for
103634500

.
vvi-u.5
for
100259037

.
ppo-u.5
for
7460370

.
mtr-u.5
for
11415306

.


Ortholog ID: 10928
Species ath gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna cre cre sbi sot cit bdi nta nta
Symbol APTX LOC100786762 LOC101257206 LOC4332518 LOC103634500 LOC103847505 LOC100259037 LOC7460370 LOC11415306 LOC123085582 LOC123097769 LOC123448900 LOC121215903 LOC107899563 LOC106435153 CHLRE_06g297904v5 CHLRE_10g432650v5 LOC8084030 LOC102578604 LOC102619121 LOC100839576 LOC107789889 LOC107826076
Function* APRATAXIN-like protein transcription factor bHLH140 transcription factor bHLH140 transcription factor bHLH140 transcription factor bHLH140 transcription factor bHLH140 transcription factor bHLH140 transcription factor bHLH140 transcription factor bHLH140 transcription factor bHLH140 transcription factor bHLH140 transcription factor bHLH140 transcription factor bHLH140 transcription factor bHLH140 transcription factor bHLH140 uncharacterized protein uncharacterized protein transcription factor bHLH140 transcription factor bHLH140 transcription factor bHLH140 transcription factor bHLH140 transcription factor bHLH140 transcription factor bHLH140
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 3
gma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 5
osa03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03022 Basal transcription factors 2
zma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03020 RNA polymerase 3
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 5
tae03410 Base excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 6
tae03410 Base excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00562 Inositol phosphate metabolism 3
ghi04070 Phosphatidylinositol signaling system 3
ghi03015 mRNA surveillance pathway 2
ghi04382 Cornified envelope formation 2
ghi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00562 Inositol phosphate metabolism 3
ghi04070 Phosphatidylinositol signaling system 3
ghi03015 mRNA surveillance pathway 2
ghi04382 Cornified envelope formation 2
ghi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 4
bna00770 Pantothenate and CoA biosynthesis 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 2
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00310 Lysine degradation 2
bdi04120 Ubiquitin mediated proteolysis 2
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03410 Base excision repair 4
nta00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03410 Base excision repair 2
nta00999 Biosynthesis of various plant secondary metabolites 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 830940 100786762 101257206 4332518 103634500 103847505 100259037 7460370 11415306 123085582 123097769 123448900 121215903 107899563 106435153 5717027 5728047 8084030 102578604 102619121 100839576 107789889 107826076
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