Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_10g428400v5   uncharacterized protein 
 ath-u.5   AT3G19440   Pseudouridine synthase family protein 
 ath-u.5   AT1G78910   Pseudouridine synthase family protein 
 gma-u.5   100817786   RNA pseudouridine synthase 3, mitochondrial 
 gma-u.5   100779473   RNA pseudouridine synthase 4, mitochondrial 
 sly-u.5   101264032   RNA pseudouridine synthase 3, mitochondrial 
 sly-u.5   101250345   RNA pseudouridine synthase 4, mitochondrial 
 osa-u.5   4346062   RNA pseudouridine synthase 3, mitochondrial-like 
 osa-u.5   4346373   RNA pseudouridine synthase 4, mitochondrial-like 
 zma-u.5   100285271   RNA pseudouridine synthase 4 mitochondrial 
 zma-u.5   100381582   RNA pseudouridine synthase 3 mitochondrial 
 vvi-u.5   100259844   RNA pseudouridine synthase 3, mitochondrial 
 vvi-u.5   100253686   RNA pseudouridine synthase 4, mitochondrial 
 ppo-u.5   7457559   RNA pseudouridine synthase 4, mitochondrial 
 ppo-u.5   18098356   RNA pseudouridine synthase 3, mitochondrial 
 mtr-u.5   25497848   RNA pseudouridine synthase 3, mitochondrial 
 mtr-u.5   25494475   RNA pseudouridine synthase 4, mitochondrial 

close


Top 50 coexpressed genes to CHLRE_10g428400v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to CHLRE_10g428400v5 (cre-r.1 coexpression data)

CoexMap"5728141"


creCHLRE_10g428400v5 | Entrez gene ID : 5728141    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 2 2 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0001522 [list] [network] pseudouridine synthesis  (29 genes)  IEA  
GO CC
GO MF
GO:0009982 [list] [network] pseudouridine synthase activity  (23 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (670 genes)  IEA  
Protein XP_042919989.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for XP_042919989.1)
Subcellular
localization
TargetP
mito 5  (predict for XP_042919989.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_10g428400v5

.
ath-u.5
for
AT3G19440

.
ath-u.5
for
AT1G78910

.
gma-u.5
for
100817786

.
gma-u.5
for
100779473

.
sly-u.5
for
101264032

.
sly-u.5
for
101250345

.
osa-u.5
for
4346062

.
osa-u.5
for
4346373

.
zma-u.5
for
100285271

.
zma-u.5
for
100381582

.
vvi-u.5
for
100259844

.
vvi-u.5
for
100253686

.
ppo-u.5
for
7457559

.
ppo-u.5
for
18098356

.
mtr-u.5
for
25497848

.
mtr-u.5
for
25494475

.


Ortholog ID: 3690
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol AT1G78910 AT3G19440 LOC100817786 LOC100779473 LOC101250345 LOC101264032 LOC4346373 LOC4346062 LOC100285271 LOC100381582 LOC103869454 LOC103832368 LOC100259844 LOC100253686 LOC7457559 LOC18098356 LOC25494475 LOC25497848 LOC123167500 LOC123111465 LOC123411625 LOC123399115 LOC107906366 LOC107928960 LOC106377216 LOC106346640 CHLRE_10g428400v5 LOC8062586 LOC8063999 LOC102580767 LOC102602144 LOC102631191 LOC102613704 LOC100846929 LOC100821438 LOC107783994 LOC107785285
Function* Pseudouridine synthase family protein Pseudouridine synthase family protein RNA pseudouridine synthase 3, mitochondrial RNA pseudouridine synthase 4, mitochondrial RNA pseudouridine synthase 4, mitochondrial RNA pseudouridine synthase 3, mitochondrial RNA pseudouridine synthase 4, mitochondrial-like RNA pseudouridine synthase 3, mitochondrial-like RNA pseudouridine synthase 4 mitochondrial RNA pseudouridine synthase 3 mitochondrial RNA pseudouridine synthase 4, mitochondrial RNA pseudouridine synthase 3, mitochondrial RNA pseudouridine synthase 3, mitochondrial RNA pseudouridine synthase 4, mitochondrial RNA pseudouridine synthase 4, mitochondrial RNA pseudouridine synthase 3, mitochondrial RNA pseudouridine synthase 4, mitochondrial RNA pseudouridine synthase 3, mitochondrial RNA pseudouridine synthase 3, mitochondrial RNA pseudouridine synthase 4, mitochondrial RNA pseudouridine synthase 3, mitochondrial RNA pseudouridine synthase 4, mitochondrial RNA pseudouridine synthase 3, mitochondrial RNA pseudouridine synthase 4, mitochondrial RNA pseudouridine synthase 4, mitochondrial RNA pseudouridine synthase 4, mitochondrial uncharacterized protein RNA pseudouridine synthase 4, mitochondrial RNA pseudouridine synthase 3, mitochondrial RNA pseudouridine synthase 3, mitochondrial RNA pseudouridine synthase 4, mitochondrial RNA pseudouridine synthase 4, mitochondrial RNA pseudouridine synthase 3, mitochondrial RNA pseudouridine synthase 3, mitochondrial RNA pseudouridine synthase 4, mitochondrial RNA pseudouridine synthase 4, mitochondrial RNA pseudouridine synthase 3, mitochondrial-like
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 3
mtr03082 ATP-dependent chromatin remodeling 3
mtr03083 Polycomb repressive complex 2
mtr03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
tae00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 4
hvu03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00564 Glycerophospholipid metabolism 2
ghi03020 RNA polymerase 2
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 2
bna03040 Spliceosome 2
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 3
bna04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 2
bdi00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00540 Lipopolysaccharide biosynthesis 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 844229 821478 100817786 100779473 101250345 101264032 4346373 4346062 100285271 100381582 103869454 103832368 100259844 100253686 7457559 18098356 25494475 25497848 123167500 123111465 123411625 123399115 107906366 107928960 106377216 106346640 5728141 8062586 8063999 102580767 102602144 102631191 102613704 100846929 100821438 107783994 107785285
The preparation time of this page was 0.1 [sec].