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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_10g426350v5   uncharacterized protein 
 ath-u.5   AT4G01995   beta-carotene isomerase D27 
 gma-u.5   100788939   uncharacterized LOC100788939 
 gma-u.5   100499918   uncharacterized LOC100499918 
 sly-u.5   101245177   uncharacterized LOC101245177 
 osa-u.5   4337711   beta-carotene isomerase D27, chloroplastic 
 zma-u.5   100279799   Beta-carotene isomerase D27 chloroplastic 
 bra-r.6   103858786   beta-carotene isomerase D27, chloroplastic 
 vvi-u.5   100253777   beta-carotene isomerase D27, chloroplastic 
 ppo-u.5   7481405   beta-carotene isomerase D27, chloroplastic 
 mtr-u.5   11412268   beta-carotene isomerase D27, chloroplastic 
 tae-r.2   123189810   beta-carotene isomerase D27, chloroplastic 
 tae-r.2   123180299   beta-carotene isomerase D27, chloroplastic 
 hvu-r.1   123416949   beta-carotene isomerase D27, chloroplastic 
 ghi-r.1   107912312   beta-carotene isomerase D27, chloroplastic 
 ghi-r.1   107924348   beta-carotene isomerase D27, chloroplastic 
 bna-r.1   106388799   beta-carotene isomerase D27, chloroplastic 
 bna-r.1   106443776   beta-carotene isomerase D27, chloroplastic 
 sbi-r.1   8068177   beta-carotene isomerase D27, chloroplastic 
 sot-r.1   102589239   beta-carotene isomerase D27, chloroplastic 
 cit-r.1   102608980   beta-carotene isomerase D27, chloroplastic 
 nta-r.1   107782038   beta-carotene isomerase D27, chloroplastic 
 nta-r.1   107809758   beta-carotene isomerase D27, chloroplastic 

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Top 50 coexpressed genes to CHLRE_10g426350v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_10g426350v5 (cre-r.1 coexpression data)

CoexMap"5728180"


creCHLRE_10g426350v5 | Entrez gene ID : 5728180      
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit nta bdi
Paralog 1 1 2 1 1 1 1 1 1 1 2 1 2 2 1 1 1 2 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005506 [list] [network] iron ion binding  (109 genes)  IEA  
Protein XP_001702558.2 [sequence] [blastp]
XP_042919957.1 [sequence] [blastp]
XP_042919958.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  chlo 3,  cyto_nucl 3,  mito 1,  plas 1,  extr 1,  mito_plas 1  (predict for XP_001702558.2)
chlo 6,  nucl 1,  mito 1,  extr 1,  cysk 1,  cyto_nucl 1,  cyto_mito 1,  nucl_plas 1,  mito_plas 1  (predict for XP_042919957.1)
chlo 6,  nucl 1,  mito 1,  extr 1,  cysk 1,  cyto_nucl 1,  cyto_mito 1,  nucl_plas 1,  mito_plas 1  (predict for XP_042919958.1)
Subcellular
localization
TargetP
other 7,  mito 3  (predict for XP_001702558.2)
chlo 6,  mito 5  (predict for XP_042919957.1)
chlo 6,  mito 5  (predict for XP_042919958.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_10g426350v5
ath-u.5
for
AT4G01995
gma-u.5
for
100788939
gma-u.5
for
100499918
sly-u.5
for
101245177
osa-u.5
for
4337711
zma-u.5
for
100279799
bra-r.6
for
103858786
vvi-u.5
for
100253777
ppo-u.5
for
7481405
mtr-u.5
for
11412268
tae-r.2
for
123189810
tae-r.2
for
123180299
hvu-r.1
for
123416949
ghi-r.1
for
107912312
ghi-r.1
for
107924348
bna-r.1
for
106388799
bna-r.1
for
106443776
sbi-r.1
for
8068177
sot-r.1
for
102589239
cit-r.1
for
102608980
nta-r.1
for
107782038
nta-r.1
for
107809758


Ortholog ID: 9600
Species cre ath gma gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna sbi sot cit nta nta
Symbol CHLRE_10g426350v5 AT4G01995 LOC100788939 LOC100499918 LOC101245177 LOC4337711 LOC100279799 LOC103858786 LOC100253777 LOC7481405 LOC11412268 LOC123189810 LOC123180299 LOC123416949 LOC107912312 LOC107924348 LOC106388799 LOC106443776 LOC8068177 LOC102589239 LOC102608980 LOC107782038 LOC107809758
Function* uncharacterized protein beta-carotene isomerase D27 uncharacterized LOC100788939 uncharacterized LOC100499918 uncharacterized LOC101245177 beta-carotene isomerase D27, chloroplastic Beta-carotene isomerase D27 chloroplastic beta-carotene isomerase D27, chloroplastic beta-carotene isomerase D27, chloroplastic beta-carotene isomerase D27, chloroplastic beta-carotene isomerase D27, chloroplastic beta-carotene isomerase D27, chloroplastic beta-carotene isomerase D27, chloroplastic beta-carotene isomerase D27, chloroplastic beta-carotene isomerase D27, chloroplastic beta-carotene isomerase D27, chloroplastic beta-carotene isomerase D27, chloroplastic beta-carotene isomerase D27, chloroplastic beta-carotene isomerase D27, chloroplastic beta-carotene isomerase D27, chloroplastic beta-carotene isomerase D27, chloroplastic beta-carotene isomerase D27, chloroplastic beta-carotene isomerase D27, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00920 Sulfur metabolism 6
cre02010 ABC transporters 4
cre01230 Biosynthesis of amino acids 3
cre00270 Cysteine and methionine metabolism 2
cre00543 Exopolysaccharide biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ath01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00630 Glyoxylate and dicarboxylate metabolism 2
vvi00710 Carbon fixation by Calvin cycle 2
vvi01200 Carbon metabolism 2
vvi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03060 Protein export 4
tae00010 Glycolysis / Gluconeogenesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00760 Nicotinate and nicotinamide metabolism 2
hvu00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 2
ghi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 2
ghi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03060 Protein export 6
bna00010 Glycolysis / Gluconeogenesis 2
bna00030 Pentose phosphate pathway 2
bna00052 Galactose metabolism 2
bna00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03060 Protein export 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 4
sot00970 Aminoacyl-tRNA biosynthesis 3
sot00230 Purine metabolism 2
sot01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00630 Glyoxylate and dicarboxylate metabolism 7
nta01200 Carbon metabolism 7
nta04146 Peroxisome 4
nta00260 Glycine, serine and threonine metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5728180 828173 100788939 100499918 101245177 4337711 100279799 103858786 100253777 7481405 11412268 123189810 123180299 123416949 107912312 107924348 106388799 106443776 8068177 102589239 102608980 107782038 107809758
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