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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_10g423800v5   uncharacterized protein 
 ath-u.5   KU80   Ku80 family protein 
 gma-u.5   100781545   ATP-dependent DNA helicase 2 subunit KU80 
 sly-u.5   101253129   ATP-dependent DNA helicase 2 subunit KU80 
 osa-u.5   9267125   ATP-dependent DNA helicase 2 subunit KU80-like 
 zma-u.5   100281554   uncharacterized LOC100281554 
 vvi-u.5   100250596   ATP-dependent DNA helicase 2 subunit KU80 
 vvi-u.5   100255780   ATP-dependent DNA helicase 2 subunit KU80 
 ppo-u.5   7464861   ATP-dependent DNA helicase 2 subunit KU80 
 mtr-u.5   11423056   ATP-dependent DNA helicase 2 subunit KU80 

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Top 50 coexpressed genes to CHLRE_10g423800v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_10g423800v5 (cre-r.1 coexpression data)

CoexMap"5728221"


creCHLRE_10g423800v5 | Entrez gene ID : 5728221      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 1 1 1 1 2 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03450 [list] [network] Non-homologous end-joining (4 genes)
GO BP
GO:0071480 [list] [network] cellular response to gamma radiation  (2 genes)  IEA  
GO:0071481 [list] [network] cellular response to X-ray  (2 genes)  IEA  
GO:0006303 [list] [network] double-strand break repair via nonhomologous end joining  (11 genes)  IEA  
GO:0000723 [list] [network] telomere maintenance  (30 genes)  IEA  
GO CC
GO:0043564 [list] [network] Ku70:Ku80 complex  (2 genes)  IEA  
GO MF
GO:0042162 [list] [network] telomeric DNA binding  (11 genes)  IEA  
GO:0003690 [list] [network] double-stranded DNA binding  (175 genes)  IEA  
Protein XP_001702579.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  cyto 3,  plas 2,  cyto_E.R. 2  (predict for XP_001702579.1)
Subcellular
localization
TargetP
other 6,  scret 5  (predict for XP_001702579.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_10g423800v5

.
ath-u.5
for
KU80

.
gma-u.5
for
100781545

.
sly-u.5
for
101253129

.
osa-u.5
for
9267125

.
zma-u.5
for
100281554

.
vvi-u.5
for
100250596

.
vvi-u.5
for
100255780

.
ppo-u.5
for
7464861

.
mtr-u.5
for
11423056

.


Ortholog ID: 11079
Species ath gma sly osa zma bra vvi vvi ppo mtr tae tae hvu ghi ghi bna cre sbi sot cit bdi nta nta
Symbol KU80 LOC100781545 LOC101253129 LOC9267125 LOC100281554 LOC103833047 LOC100255780 LOC100250596 LOC7464861 LOC11423056 LOC101290622 LOC123114443 LOC123395211 LOC107941746 LOC107911912 LOC106429361 CHLRE_10g423800v5 LOC8059256 LOC102579031 LOC102626662 LOC100830366 LOC107831338 LOC107773758
Function* Ku80 family protein ATP-dependent DNA helicase 2 subunit KU80 ATP-dependent DNA helicase 2 subunit KU80 ATP-dependent DNA helicase 2 subunit KU80-like uncharacterized LOC100281554 ATP-dependent DNA helicase 2 subunit KU80 ATP-dependent DNA helicase 2 subunit KU80 ATP-dependent DNA helicase 2 subunit KU80 ATP-dependent DNA helicase 2 subunit KU80 ATP-dependent DNA helicase 2 subunit KU80 ATP-dependent DNA helicase 2 subunit KU80 ATP-dependent DNA helicase 2 subunit KU80 ATP-dependent DNA helicase 2 subunit KU80 ATP-dependent DNA helicase 2 subunit KU80 ATP-dependent DNA helicase 2 subunit KU80 ATP-dependent DNA helicase 2 subunit KU80 uncharacterized protein ATP-dependent DNA helicase 2 subunit KU80 ATP-dependent DNA helicase 2 subunit KU80 ATP-dependent DNA helicase 2 subunit KU80 ATP-dependent DNA helicase 2 subunit KU80 ATP-dependent DNA helicase 2 subunit KU80 ATP-dependent DNA helicase 2 subunit KU80-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03430 Mismatch repair 3
gma03030 DNA replication 2
gma03420 Nucleotide excision repair 2
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00190 Oxidative phosphorylation 3
osa04145 Phagosome 2
osa00520 Amino sugar and nucleotide sugar metabolism 2
osa01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03030 DNA replication 3
ppo03430 Mismatch repair 3
ppo03410 Base excision repair 2
ppo03420 Nucleotide excision repair 2
ppo03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 3
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
tae03450 Non-homologous end-joining 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00340 Histidine metabolism 3
tae01230 Biosynthesis of amino acids 3
tae03450 Non-homologous end-joining 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 4
ghi03450 Non-homologous end-joining 4
ghi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 4
ghi03450 Non-homologous end-joining 4
ghi03440 Homologous recombination 2
ghi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 2
sbi03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 2
sot03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03430 Mismatch repair 3
bdi03460 Fanconi anemia pathway 2
bdi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta03082 ATP-dependent chromatin remodeling 2
nta03450 Non-homologous end-joining 2
nta03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta03082 ATP-dependent chromatin remodeling 2
nta03450 Non-homologous end-joining 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 841223 100781545 101253129 9267125 100281554 103833047 100255780 100250596 7464861 11423056 101290622 123114443 123395211 107941746 107911912 106429361 5728221 8059256 102579031 102626662 100830366 107831338 107773758
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