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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_10g421600v5   uncharacterized protein 
 ath-u.5   EMB2761   threonyl-tRNA synthetase, putative / threonine-tRNA ligase 
 gma-u.5   100784904   threonine--tRNA ligase, chloroplastic/mitochondrial 2 
 sly-u.5   101249471   threonine--tRNA ligase, chloroplastic/mitochondrial 2 
 osa-u.5   4329580   threonine--tRNA ligase, chloroplastic/mitochondrial 2 
 zma-u.5   109940924   threonine--tRNA ligase, chloroplastic/mitochondrial 2 
 vvi-u.5   100256277   threonine--tRNA ligase, chloroplastic/mitochondrial 2 
 ppo-u.5   7455977   threonine--tRNA ligase, chloroplastic/mitochondrial 2 
 mtr-u.5   11437353   threonine--tRNA ligase, chloroplastic/mitochondrial 2 

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Top 50 coexpressed genes to CHLRE_10g421600v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_10g421600v5 (cre-r.1 coexpression data)

CoexMap"5728261"


creCHLRE_10g421600v5 | Entrez gene ID : 5728261      
Species cre ath gma sly osa zma vvi ppo mtr ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre00970 [list] [network] Aminoacyl-tRNA biosynthesis (65 genes)
GO BP
GO:0006435 [list] [network] threonyl-tRNA aminoacylation  (2 genes)  IEA  
GO CC
GO:0009570 [list] [network] chloroplast stroma  (41 genes)  IEA  
GO:0005739 [list] [network] mitochondrion  (441 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (2907 genes)  IEA  
GO MF
GO:0004829 [list] [network] threonine-tRNA ligase activity  (2 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (1223 genes)  IEA  
Protein XP_042919878.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  chlo 3,  cyto_nucl 3  (predict for XP_042919878.1)
Subcellular
localization
TargetP
other 7,  mito 4  (predict for XP_042919878.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_10g421600v5

.
ath-u.5
for
EMB2761

.
gma-u.5
for
100784904

.
sly-u.5
for
101249471

.
osa-u.5
for
4329580

.
zma-u.5
for
109940924

.
vvi-u.5
for
100256277

.
ppo-u.5
for
7455977

.
mtr-u.5
for
11437353

.


Ortholog ID: 11232
Species ath gma sly osa zma bra vvi ppo mtr tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol EMB2761 LOC100784904 LOC101249471 LOC4329580 LOC109940924 LOC103860316 LOC100256277 LOC7455977 LOC11437353 LOC123145308 LOC123401941 LOC107952800 LOC107954671 LOC106439803 LOC111204593 CHLRE_10g421600v5 LOC8058371 LOC102600652 LOC102618874 LOC100841537 LOC107788827 LOC107792707
Function* threonyl-tRNA synthetase, putative / threonine-tRNA ligase threonine--tRNA ligase, chloroplastic/mitochondrial 2 threonine--tRNA ligase, chloroplastic/mitochondrial 2 threonine--tRNA ligase, chloroplastic/mitochondrial 2 threonine--tRNA ligase, chloroplastic/mitochondrial 2 threonine--tRNA ligase, chloroplastic/mitochondrial 2 threonine--tRNA ligase, chloroplastic/mitochondrial 2 threonine--tRNA ligase, chloroplastic/mitochondrial 2 threonine--tRNA ligase, chloroplastic/mitochondrial 2 threonine--tRNA ligase, chloroplastic/mitochondrial 2 threonine--tRNA ligase, chloroplastic/mitochondrial 2 threonine--tRNA ligase, chloroplastic/mitochondrial 2 threonine--tRNA ligase, chloroplastic/mitochondrial 2 threonine--tRNA ligase, chloroplastic/mitochondrial 2 threonine--tRNA ligase, chloroplastic/mitochondrial 2 uncharacterized protein threonine--tRNA ligase, chloroplastic/mitochondrial 2 threonine--tRNA ligase, chloroplastic/mitochondrial 2 threonine--tRNA ligase, chloroplastic/mitochondrial 2 threonine--tRNA ligase, chloroplastic/mitochondrial 2 threonine--tRNA ligase, chloroplastic/mitochondrial 2 threonine--tRNA ligase, chloroplastic/mitochondrial 2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 3
gma00620 Pyruvate metabolism 2
gma00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00630 Glyoxylate and dicarboxylate metabolism 3
vvi01200 Carbon metabolism 3
vvi00860 Porphyrin metabolism 2
vvi00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 2
mtr04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00860 Porphyrin metabolism 4
ghi00970 Aminoacyl-tRNA biosynthesis 2
ghi00010 Glycolysis / Gluconeogenesis 2
ghi00053 Ascorbate and aldarate metabolism 2
ghi00071 Fatty acid degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00860 Porphyrin metabolism 4
ghi00970 Aminoacyl-tRNA biosynthesis 2
ghi00010 Glycolysis / Gluconeogenesis 2
ghi00053 Ascorbate and aldarate metabolism 2
ghi00071 Fatty acid degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00190 Oxidative phosphorylation 2
bna00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00920 Sulfur metabolism 2
bna00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00970 Aminoacyl-tRNA biosynthesis 8
cre03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00970 Aminoacyl-tRNA biosynthesis 3
cit00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00630 Glyoxylate and dicarboxylate metabolism 3
bdi00260 Glycine, serine and threonine metabolism 2
bdi01200 Carbon metabolism 2
bdi00906 Carotenoid biosynthesis 2
bdi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 4
nta00220 Arginine biosynthesis 2
nta00250 Alanine, aspartate and glutamate metabolism 2
nta00260 Glycine, serine and threonine metabolism 2
nta00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 2
nta00010 Glycolysis / Gluconeogenesis 2
nta00030 Pentose phosphate pathway 2
nta00052 Galactose metabolism 2
nta00230 Purine metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 815029 100784904 101249471 4329580 109940924 103860316 100256277 7455977 11437353 123145308 123401941 107952800 107954671 106439803 111204593 5728261 8058371 102600652 102618874 100841537 107788827 107792707
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