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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_10g417650v5   uncharacterized protein 
 ath-u.5   AGL26   tRNA (cytidine(34)-2'-O)-methyltransferase 
 gma-u.5   100813874   putative tRNA (cytidine(34)-2'-O)-methyltransferase-like 
 sly-u.5   101265962   uncharacterized LOC101265962 
 osa-u.5   4345983   uncharacterized LOC4345983 
 zma-u.5   103641996   uncharacterized LOC103641996 
 vvi-u.5   100855321   uncharacterized LOC100855321 
 ppo-u.5   7454896   uncharacterized LOC7454896 
 mtr-u.5   11421937   putative tRNA (cytidine(34)-2'-O)-methyltransferase 

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Top 50 coexpressed genes to CHLRE_10g417650v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_10g417650v5 (cre-r.1 coexpression data)

CoexMap"5728343"


creCHLRE_10g417650v5 | Entrez gene ID : 5728343    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0002131 [list] [network] wobble position cytosine ribose methylation  (1 genes)  IEA  
GO:0002132 [list] [network] wobble position uridine ribose methylation  (1 genes)  IEA  
GO CC
GO MF
GO:0008173 [list] [network] RNA methyltransferase activity  (41 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (670 genes)  IEA  
Protein XP_001702806.2 [sequence] [blastp]
Subcellular
localization
wolf
mito 5,  chlo 4  (predict for XP_001702806.2)
Subcellular
localization
TargetP
chlo 7,  mito 5  (predict for XP_001702806.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_10g417650v5

.
ath-u.5
for
AGL26

.
gma-u.5
for
100813874

.
sly-u.5
for
101265962

.
osa-u.5
for
4345983

.
zma-u.5
for
103641996

.
vvi-u.5
for
100855321

.
ppo-u.5
for
7454896

.
mtr-u.5
for
11421937

.


Ortholog ID: 9695
Species ath gma sly osa zma bra bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi cit bdi nta nta
Symbol AGL26 LOC100813874 LOC101265962 LOC4345983 LOC103641996 LOC103859540 LOC117132420 LOC100855321 LOC7454896 LOC11421937 LOC123166768 LOC123151176 LOC123411725 LOC107900731 LOC107930111 LOC125584496 LOC106389160 CHLRE_10g417650v5 LOC8055182 LOC102626218 LOC100846630 LOC107820968 LOC107820483
Function* tRNA (cytidine(34)-2'-O)-methyltransferase putative tRNA (cytidine(34)-2'-O)-methyltransferase-like uncharacterized LOC101265962 uncharacterized LOC4345983 uncharacterized LOC103641996 putative tRNA (cytidine(34)-2'-O)-methyltransferase putative tRNA (cytidine(34)-2'-O)-methyltransferase uncharacterized LOC100855321 uncharacterized LOC7454896 putative tRNA (cytidine(34)-2'-O)-methyltransferase putative tRNA (cytidine(34)-2'-O)-methyltransferase putative tRNA (cytidine(34)-2'-O)-methyltransferase putative tRNA (cytidine(34)-2'-O)-methyltransferase putative tRNA (cytidine(34)-2'-O)-methyltransferase putative tRNA (cytidine(34)-2'-O)-methyltransferase putative tRNA (cytidine(34)-2'-O)-methyltransferase putative tRNA (cytidine(34)-2'-O)-methyltransferase uncharacterized protein putative tRNA (cytidine(34)-2'-O)-methyltransferase hypothetical protein putative tRNA (cytidine(34)-2'-O)-methyltransferase uncharacterized LOC107820968 uncharacterized LOC107820483
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 2
ath01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 9
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00860 Porphyrin metabolism 2
osa01240 Biosynthesis of cofactors 2
osa03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00300 Lysine biosynthesis 3
bra01230 Biosynthesis of amino acids 3
bra00260 Glycine, serine and threonine metabolism 2
bra00261 Monobactam biosynthesis 2
bra00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00770 Pantothenate and CoA biosynthesis 2
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03460 Fanconi anemia pathway 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03460 Fanconi anemia pathway 4
ghi00562 Inositol phosphate metabolism 2
ghi04070 Phosphatidylinositol signaling system 2
ghi04136 Autophagy - other 2
ghi04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00062 Fatty acid elongation 2
nta01040 Biosynthesis of unsaturated fatty acids 2
nta01212 Fatty acid metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 832746 100813874 101265962 4345983 103641996 103859540 117132420 100855321 7454896 11421937 123166768 123151176 123411725 107900731 107930111 125584496 106389160 5728343 8055182 102626218 100846630 107820968 107820483
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