ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
cre-r.1	CHLRE_12g559050v5	uncharacterized protein
ath-u.5	AT2G06040	F-box/LRR protein
gma-u.5	100808150	uncharacterized LOC100808150
gma-u.5	100798274	F-box/LRR-repeat protein 3
gma-u.5	100797833	leucine-rich repeat-containing protein
sly-u.5	101267038	DNA repair protein RAD7-like
sly-u.5	101263833	uncharacterized LOC101263833
osa-u.5	4345759	uncharacterized LOC4345759
zma-u.5	103653335	uncharacterized LOC103653335
zma-u.5	103643234	uncharacterized LOC103643234
bra-r.6	103828497	uncharacterized LOC103828497
vvi-u.5	100244043	uncharacterized LOC100244043
vvi-u.5	100252702	uncharacterized LOC100252702
ppo-u.5	18100339	uncharacterized LOC18100339
ppo-u.5	7492293	uncharacterized LOC7492293
mtr-u.5	25494178	uncharacterized LOC25494178
mtr-u.5	120579503	F-box/LRR-repeat protein fbxl-1
tae-r.2	123160201	uncharacterized LOC123160201
tae-r.2	123149123	uncharacterized LOC123149123
tae-r.2	123166063	uncharacterized LOC123166063
hvu-r.1	123411020	uncharacterized LOC123411020
ghi-r.1	107901067	lysine-specific demethylase 2B
ghi-r.1	107951068	uncharacterized LOC107951068
ghi-r.1	121231965	F-box/LRR-repeat protein 4
bna-r.1	106432265	uncharacterized LOC106432265
bna-r.1	106357748	uncharacterized LOC106357748
sbi-r.1	8080646	uncharacterized LOC8080646
sot-r.1	102604140	uncharacterized LOC102604140
sot-r.1	102598857	uncharacterized LOC102598857
cit-r.1	102618698	uncharacterized LOC102618698
bdi-r.1	100825936	uncharacterized LOC100825936
nta-r.1	107800926	uncharacterized LOC107800926
nta-r.1	107792277	uncharacterized LOC107792277
nta-r.1	107788469	uncharacterized LOC107788469

Top 50 coexpressed genes to CHLRE_12g559050v5 (cre-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to CHLRE_12g559050v5 (cre-r.1 coexpression data)

CoexMap"5728391"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0031146 [list] [network] SCF-dependent proteasomal ubiquitin-dependent protein catabolic process

(40 genes)

IEA

GO CC

GO:0019005 [list] [network] SCF ubiquitin ligase complex

(40 genes)

IEA

GO MF

GO:0005515 [list] [network] protein binding

(1927 genes)

IEA

Protein

XP_042918858.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 3, nucl 2, cyto 2, cyto_nucl 2, mito 1

(predict for XP_042918858.1)

Subcellular
localization
TargetP

other 8

(predict for XP_042918858.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_12g559050v5	ath-u.5 for AT2G06040	gma-u.5 for 100808150	gma-u.5 for 100798274	gma-u.5 for 100797833	sly-u.5 for 101267038	sly-u.5 for 101263833	osa-u.5 for 4345759	zma-u.5 for 103653335	zma-u.5 for 103643234	bra-r.6 for 103828497	vvi-u.5 for 100244043	vvi-u.5 for 100252702	ppo-u.5 for 18100339	ppo-u.5 for 7492293	mtr-u.5 for 25494178	mtr-u.5 for 120579503	tae-r.2 for 123160201	tae-r.2 for 123149123	tae-r.2 for 123166063	hvu-r.1 for 123411020	ghi-r.1 for 107901067	ghi-r.1 for 107951068	ghi-r.1 for 121231965	bna-r.1 for 106432265	bna-r.1 for 106357748	sbi-r.1 for 8080646	sot-r.1 for 102604140	sot-r.1 for 102598857	cit-r.1 for 102618698	bdi-r.1 for 100825936	nta-r.1 for 107800926	nta-r.1 for 107792277	nta-r.1 for 107788469

Ortholog

Ortholog ID: 4853

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

Function^*

uncharacterized protein

F-box/LRR protein

uncharacterized LOC100808150

F-box/LRR-repeat protein 3

leucine-rich repeat-containing protein

DNA repair protein RAD7-like

uncharacterized LOC101263833

uncharacterized LOC4345759

uncharacterized LOC103653335

uncharacterized LOC103643234

uncharacterized LOC103828497

uncharacterized LOC100244043

uncharacterized LOC100252702

uncharacterized LOC18100339

uncharacterized LOC7492293

uncharacterized LOC25494178

uncharacterized LOC25494176

uncharacterized LOC123160201

uncharacterized LOC123149123

uncharacterized LOC123166063

uncharacterized LOC123411020

lysine-specific demethylase 2B

F-box/LRR-repeat protein 4

uncharacterized LOC107929937

uncharacterized LOC106432265

uncharacterized LOC106357748

uncharacterized LOC8080646

uncharacterized LOC102604140

uncharacterized LOC102598857

uncharacterized LOC102618698

uncharacterized LOC100825936

uncharacterized LOC107800926

uncharacterized LOC107792277

uncharacterized LOC107783261

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03430	Mismatch repair	3
ath03008	Ribosome biogenesis in eukaryotes	2
ath03410	Base excision repair	2
ath03030	DNA replication	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04075	Plant hormone signal transduction	2
gma01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00510	N-Glycan biosynthesis	3
gma00513	Various types of N-glycan biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03030	DNA replication	8
sly03430	Mismatch repair	3
sly03008	Ribosome biogenesis in eukaryotes	2
sly03420	Nucleotide excision repair	2
sly03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03030	DNA replication	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03050	Proteasome	2
vvi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo02010	ABC transporters	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	6
tae03440	Homologous recombination	3
tae03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00970	Aminoacyl-tRNA biosynthesis	4
tae03013	Nucleocytoplasmic transport	3
tae03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00970	Aminoacyl-tRNA biosynthesis	4
tae03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	9
hvu03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03440	Homologous recombination	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03030	DNA replication	4
bna03430	Mismatch repair	4
bna03440	Homologous recombination	4
bna03013	Nucleocytoplasmic transport	2
bna03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03030	DNA replication	2
bna03430	Mismatch repair	2
bna03440	Homologous recombination	2
bna03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00270	Cysteine and methionine metabolism	4
sot00260	Glycine, serine and threonine metabolism	4
sot01230	Biosynthesis of amino acids	4
sot01200	Carbon metabolism	3
sot00750	Vitamin B6 metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04145	Phagosome	2
nta04517	IgSF CAM signaling	2
nta04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00240	Pyrimidine metabolism	6
nta01232	Nucleotide metabolism	6
nta00230	Purine metabolism	4
nta00480	Glutathione metabolism	4
nta04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00500	Starch and sucrose metabolism	4
nta03420	Nucleotide excision repair	2

Expression

Expression pattern

Entrez Gene ID^*

5728391

815159

100808150

100798274

100797833

101267038

101263833

4345759

103653335

103643234

103828497

100244043

100252702

18100339

7492293

25494178

25494176

123160201

123149123

123166063

123411020

107901067

121231965

107929937

106432265

106357748

8080646

102604140

102598857

102618698

100825936

107800926

107792277

107783261

The preparation time of this page was 0.4 [sec].


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta
Paralog	1	1	3	2	1	2	1	2	2	2	3	1	3	2	1	2	1	1	3

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_12g559050v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_12g559050v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**