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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_03g180800v5   uncharacterized protein 
 ath-u.5   SNL1   SIN3-like 1 
 ath-u.5   SNL2   SIN3-like 2 
 ath-u.5   SNL3   SIN3-like 3 
 gma-u.5   100781798   paired amphipathic helix protein Sin3-like 3 
 gma-u.5   100807181   paired amphipathic helix protein Sin3-like 2 
 gma-u.5   100811928   paired amphipathic helix protein Sin3-like 4 
 sly-u.5   101264278   paired amphipathic helix protein Sin3-like 2 
 sly-u.5   101253486   paired amphipathic helix protein Sin3-like 4 
 sly-u.5   101261776   paired amphipathic helix protein Sin3-like 2 
 osa-u.5   4326133   paired amphipathic helix protein Sin3-like 3 
 osa-u.5   4337520   paired amphipathic helix protein Sin3-like 4 
 zma-u.5   103649898   paired amphipathic helix protein Sin3-like 3 
 zma-u.5   103634740   paired amphipathic helix protein Sin3-like 4 
 zma-u.5   103629312   paired amphipathic helix protein Sin3-like 4 
 vvi-u.5   100254234   paired amphipathic helix protein Sin3-like 2 
 vvi-u.5   100243213   paired amphipathic helix protein Sin3-like 4 
 ppo-u.5   7460792   paired amphipathic helix protein Sin3-like 4 
 ppo-u.5   7469070   paired amphipathic helix protein Sin3-like 4 
 ppo-u.5   18095308   paired amphipathic helix protein Sin3-like 2 
 mtr-u.5   11411021   paired amphipathic helix protein Sin3-like 3 
 mtr-u.5   11408135   paired amphipathic helix protein Sin3-like 4 
 mtr-u.5   11421085   paired amphipathic helix protein Sin3-like 2 

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Top 50 coexpressed genes to CHLRE_03g180800v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_03g180800v5 (cre-r.1 coexpression data)

CoexMap"5728474"


creCHLRE_03g180800v5 | Entrez gene ID : 5728474    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 3 3 3 2 3 2 3 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000122 [list] [network] negative regulation of transcription by RNA polymerase II  (12 genes)  IEA  
GO CC
GO:0000118 [list] [network] histone deacetylase complex  (17 genes)  IEA  
GO:0000785 [list] [network] chromatin  (219 genes)  IEA  
GO MF
GO:0003714 [list] [network] transcription corepressor activity  (10 genes)  IEA  
Protein XP_042926171.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  chlo 4,  mito 1,  plas 1,  cysk 1,  cysk_plas 1,  mito_plas 1  (predict for XP_042926171.1)
Subcellular
localization
TargetP
mito 5  (predict for XP_042926171.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_03g180800v5

.
ath-u.5
for
SNL1

.
ath-u.5
for
SNL2

.
ath-u.5
for
SNL3

.
gma-u.5
for
100781798

.
gma-u.5
for
100807181

.
gma-u.5
for
100811928

.
sly-u.5
for
101264278

.
sly-u.5
for
101253486

.
sly-u.5
for
101261776

.
osa-u.5
for
4326133

.
osa-u.5
for
4337520

.
zma-u.5
for
103649898

.
zma-u.5
for
103634740

.
zma-u.5
for
103629312

.
vvi-u.5
for
100254234

.
vvi-u.5
for
100243213

.
ppo-u.5
for
7460792

.
ppo-u.5
for
7469070

.
ppo-u.5
for
18095308

.
mtr-u.5
for
11411021

.
mtr-u.5
for
11408135

.
mtr-u.5
for
11421085

.


Ortholog ID: 1625
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol SNL1 SNL4 LOC100807181 LOC100813398 LOC101253486 LOC101264278 LOC4337520 LOC4326133 LOC103629312 LOC103634740 LOC103831552 LOC103850076 LOC100243213 LOC100254234 LOC7469070 LOC7460792 LOC11408135 LOC25501504 LOC123068176 LOC123059752 LOC123442356 LOC123430374 LOC107939074 LOC107886630 LOC106353947 LOC106431788 CHLRE_03g180800v5 LOC8065349 LOC8079088 LOC102602535 LOC102584539 LOC102607961 LOC102612187 LOC100833378 LOC100824976 LOC107766319 LOC107805514
Function* SIN3-like 1 SIN3-like 4 paired amphipathic helix protein Sin3-like 2 paired amphipathic helix protein Sin3-like 4 paired amphipathic helix protein Sin3-like 4 paired amphipathic helix protein Sin3-like 2 paired amphipathic helix protein Sin3-like 4 paired amphipathic helix protein Sin3-like 3 paired amphipathic helix protein Sin3-like 4 paired amphipathic helix protein Sin3-like 4 paired amphipathic helix protein Sin3-like 4 paired amphipathic helix protein Sin3-like 1 paired amphipathic helix protein Sin3-like 4 paired amphipathic helix protein Sin3-like 2 paired amphipathic helix protein Sin3-like 4 paired amphipathic helix protein Sin3-like 4 paired amphipathic helix protein Sin3-like 4 paired amphipathic helix protein Sin3-like 3 paired amphipathic helix protein Sin3-like 3 paired amphipathic helix protein Sin3-like 3 paired amphipathic helix protein Sin3-like 3 paired amphipathic helix protein Sin3-like 4 paired amphipathic helix protein Sin3-like 2 paired amphipathic helix protein Sin3-like 4 paired amphipathic helix protein Sin3-like 4 paired amphipathic helix protein Sin3-like 2 uncharacterized protein paired amphipathic helix protein Sin3-like 5 paired amphipathic helix protein Sin3-like 3 paired amphipathic helix protein Sin3-like 2 paired amphipathic helix protein Sin3-like 4 paired amphipathic helix protein Sin3-like 2 paired amphipathic helix protein Sin3-like 4 paired amphipathic helix protein Sin3-like 4 paired amphipathic helix protein Sin3-like 3 paired amphipathic helix protein Sin3-like 2 paired amphipathic helix protein Sin3-like 2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03083 Polycomb repressive complex 3
ath03250 Viral life cycle - HIV-1 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 3
gma03082 ATP-dependent chromatin remodeling 2
gma00564 Glycerophospholipid metabolism 2
gma00565 Ether lipid metabolism 2
gma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00562 Inositol phosphate metabolism 2
zma04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03083 Polycomb repressive complex 2
bra03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 4
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 2
tae03010 Ribosome 2
tae00770 Pantothenate and CoA biosynthesis 2
tae01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 3
tae00500 Starch and sucrose metabolism 2
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00562 Inositol phosphate metabolism 2
ghi04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00380 Tryptophan metabolism 2
bna04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03250 Viral life cycle - HIV-1 2
sbi04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03082 ATP-dependent chromatin remodeling 2
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 3
bdi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00310 Lysine degradation 2
nta03013 Nucleocytoplasmic transport 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 2
nta03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821265 843342 100807181 100813398 101253486 101264278 4337520 4326133 103629312 103634740 103831552 103850076 100243213 100254234 7469070 7460792 11408135 25501504 123068176 123059752 123442356 123430374 107939074 107886630 106353947 106431788 5728474 8065349 8079088 102602535 102584539 102607961 102612187 100833378 100824976 107766319 107805514
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