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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_03g181650v5   uncharacterized protein 
 ath-u.5   emb1379   embryo defective 1379 
 gma-u.5   100803479   non-structural maintenance of chromosomes element 1 homolog 
 sly-u.5   101257695   uncharacterized LOC101257695 
 osa-u.5   4349672   uncharacterized LOC4349672 
 osa-u.5   4351390   uncharacterized LOC4351390 
 zma-u.5   100274498   embryo defective 1379 
 vvi-u.5   100259925   uncharacterized LOC100259925 
 ppo-u.5   18098054   uncharacterized LOC18098054 
 mtr-u.5   25489594   non-structural maintenance of chromosomes element 1 homolog 

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Top 50 coexpressed genes to CHLRE_03g181650v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_03g181650v5 (cre-r.1 coexpression data)

CoexMap"5728484"


creCHLRE_03g181650v5 | Entrez gene ID : 5728484      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 1 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006301 [list] [network] DNA damage tolerance  (15 genes)  IEA  
GO:0000724 [list] [network] double-strand break repair via homologous recombination  (82 genes)  IEA  
GO CC
GO:0030915 [list] [network] Smc5-Smc6 complex  (8 genes)  IEA  
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO MF
GO:0004842 [list] [network] ubiquitin-protein transferase activity  (132 genes)  IEA  
Protein XP_001702912.2 [sequence] [blastp]
Subcellular
localization
wolf
mito 4,  cyto 2,  cyto_mito 2,  nucl_plas 2,  nucl 1,  plas 1  (predict for XP_001702912.2)
Subcellular
localization
TargetP
other 7,  scret 3  (predict for XP_001702912.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_03g181650v5

.
ath-u.5
for
emb1379

.
gma-u.5
for
100803479

.
sly-u.5
for
101257695

.
osa-u.5
for
4349672

.
osa-u.5
for
4351390

.
zma-u.5
for
100274498

.
vvi-u.5
for
100259925

.
ppo-u.5
for
18098054

.
mtr-u.5
for
25489594

.


Ortholog ID: 7345
Species ath gma sly osa osa zma bra vvi ppo mtr tae tae hvu ghi ghi cre sbi sbi sot cit bdi bdi nta nta
Symbol emb1379 LOC100803479 LOC101257695 LOC4351390 LOC4349672 LOC100274498 LOC103851402 LOC100259925 LOC18098054 LOC25489594 LOC123120433 LOC123111301 LOC123452870 LOC121224211 LOC121215567 CHLRE_03g181650v5 LOC8071439 LOC8083054 LOC102585398 LOC102625235 LOC112270699 LOC100845442 LOC107825748 LOC107830679
Function* embryo defective 1379 non-structural maintenance of chromosomes element 1 homolog uncharacterized LOC101257695 uncharacterized LOC4351390 uncharacterized LOC4349672 embryo defective 1379 uncharacterized LOC103851402 uncharacterized LOC100259925 uncharacterized LOC18098054 non-structural maintenance of chromosomes element 1 homolog non-structural maintenance of chromosomes element 1 homolog non-structural maintenance of chromosomes element 1 homolog non-structural maintenance of chromosomes element 1 homolog non-structural maintenance of chromosomes element 1 homolog non-structural maintenance of chromosomes element 1 homolog uncharacterized protein non-structural maintenance of chromosomes element 1 homolog non-structural maintenance of chromosomes element 1 homolog non-structural maintenance of chromosomes element 1 homolog uncharacterized LOC102625235 non-structural maintenance of chromosomes element 1 homolog non-structural maintenance of chromosomes element 1 homolog uncharacterized LOC107825748 uncharacterized LOC107830679
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 6
ath03410 Base excision repair 4
ath03430 Mismatch repair 3
ath03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03030 DNA replication 10
sly03420 Nucleotide excision repair 2
sly03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00240 Pyrimidine metabolism 3
osa01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00240 Pyrimidine metabolism 3
osa01232 Nucleotide metabolism 3
osa00230 Purine metabolism 2
osa00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00500 Starch and sucrose metabolism 3
zma03030 DNA replication 2
zma00520 Amino sugar and nucleotide sugar metabolism 2
zma01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 9
bra00240 Pyrimidine metabolism 2
bra01232 Nucleotide metabolism 2
bra03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03430 Mismatch repair 7
vvi03030 DNA replication 6
vvi03420 Nucleotide excision repair 6
vvi03410 Base excision repair 4
vvi03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03030 DNA replication 4
ppo03440 Homologous recombination 2
ppo03410 Base excision repair 2
ppo03420 Nucleotide excision repair 2
ppo03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 3
tae03410 Base excision repair 3
tae03420 Nucleotide excision repair 3
tae03430 Mismatch repair 3
tae03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 3
tae03030 DNA replication 2
tae03410 Base excision repair 2
tae03420 Nucleotide excision repair 2
tae03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 7
ghi03420 Nucleotide excision repair 7
ghi03430 Mismatch repair 7
ghi03410 Base excision repair 4
ghi03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 6
ghi03420 Nucleotide excision repair 6
ghi03430 Mismatch repair 6
ghi03410 Base excision repair 4
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 2
cre03410 Base excision repair 2
cre03420 Nucleotide excision repair 2
cre03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01200 Carbon metabolism 3
sbi01230 Biosynthesis of amino acids 3
sbi00010 Glycolysis / Gluconeogenesis 2
sbi00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03030 DNA replication 3
sot00230 Purine metabolism 2
sot00240 Pyrimidine metabolism 2
sot00480 Glutathione metabolism 2
sot01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03030 DNA replication 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00230 Purine metabolism 2
bdi00240 Pyrimidine metabolism 2
bdi00480 Glutathione metabolism 2
bdi01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00230 Purine metabolism 2
bdi00240 Pyrimidine metabolism 2
bdi00480 Glutathione metabolism 2
bdi01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 4
nta03420 Nucleotide excision repair 4
nta03082 ATP-dependent chromatin remodeling 2
nta03410 Base excision repair 2
nta03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 3
nta03420 Nucleotide excision repair 3
nta03082 ATP-dependent chromatin remodeling 2
nta03410 Base excision repair 2
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 832240 100803479 101257695 4351390 4349672 100274498 103851402 100259925 18098054 25489594 123120433 123111301 123452870 121224211 121215567 5728484 8071439 8083054 102585398 102625235 112270699 100845442 107825748 107830679
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