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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_12g514750v5   uncharacterized protein 
 ath-u.5   ATCS   Citrate synthase family protein 
 gma-u.5   100499624   citrate synthase 
 gma-u.5   100781418   citrate synthase, mitochondrial 
 sly-u.5   101249011   citrate synthase, mitochondrial 
 osa-u.5   4350660   citrate synthase 4, mitochondrial 
 osa-u.5   4328598   citrate synthase 4, mitochondrial 
 zma-u.5   100194338   uncharacterized LOC100194338 
 zma-u.5   100279573   uncharacterized LOC100279573 
 zma-u.5   100280203   uncharacterized LOC100280203 
 vvi-u.5   100261432   citrate synthase, mitochondrial 
 ppo-u.5   18094999   citrate synthase, mitochondrial 
 mtr-u.5   25486862   citrate synthase, mitochondrial 

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Top 50 coexpressed genes to CHLRE_12g514750v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_12g514750v5 (cre-r.1 coexpression data)

CoexMap"5728523"


creCHLRE_12g514750v5 | Entrez gene ID : 5728523      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 1 2 3 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre00020 [list] [network] Citrate cycle (TCA cycle) (33 genes)
cre00630 [list] [network] Glyoxylate and dicarboxylate metabolism (43 genes)
cre01200 [list] [network] Carbon metabolism (143 genes)
cre01210 [list] [network] 2-Oxocarboxylic acid metabolism (46 genes)
cre01230 [list] [network] Biosynthesis of amino acids (116 genes)
GO BP
GO:0006101 [list] [network] citrate metabolic process  (1 genes)  IEA  
GO:0006099 [list] [network] tricarboxylic acid cycle  (24 genes)  IEA  
GO:0005975 [list] [network] carbohydrate metabolic process  (185 genes)  IEA  
GO CC
GO:0005759 [list] [network] mitochondrial matrix  (126 genes)  IEA  
GO MF
Protein XP_001702983.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  mito 4,  cyto 1,  plas 1,  cyto_plas 1  (predict for XP_001702983.1)
Subcellular
localization
TargetP
chlo 2  (predict for XP_001702983.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_12g514750v5

.
ath-u.5
for
ATCS

.
gma-u.5
for
100499624

.
gma-u.5
for
100781418

.
sly-u.5
for
101249011

.
osa-u.5
for
4350660

.
osa-u.5
for
4328598

.
zma-u.5
for
100194338

.
zma-u.5
for
100279573

.
zma-u.5
for
100280203

.
vvi-u.5
for
100261432

.
ppo-u.5
for
18094999

.
mtr-u.5
for
25486862

.


Ortholog ID: 5977
Species ath gma gma sly osa osa zma zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol ATCS LOC100781418 LOC100499624 LOC101249011 LOC4328598 LOC4350660 LOC100279573 LOC100194338 LOC103866133 LOC100261432 LOC18094999 LOC25486862 LOC123144240 LOC123136754 LOC123401217 LOC107905799 LOC107913953 LOC106438218 LOC111215193 CHLRE_12g514750v5 LOC8071625 LOC102595372 LOC102577950 LOC100821411 LOC107791757 LOC107779254
Function* Citrate synthase family protein citrate synthase, mitochondrial citrate synthase citrate synthase, mitochondrial citrate synthase 4, mitochondrial citrate synthase 4, mitochondrial uncharacterized LOC100279573 uncharacterized LOC100194338 citrate synthase 4, mitochondrial citrate synthase, mitochondrial citrate synthase, mitochondrial citrate synthase, mitochondrial citrate synthase 4, mitochondrial citrate synthase 4, mitochondrial citrate synthase 4, mitochondrial-like citrate synthase, mitochondrial citrate synthase, mitochondrial citrate synthase 4, mitochondrial citrate synthase 4, mitochondrial-like uncharacterized protein citrate synthase 4, mitochondrial citrate synthase, mitochondrial citrate synthase citrate synthase 4, mitochondrial citrate synthase, mitochondrial citrate synthase, mitochondrial-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01200 Carbon metabolism 14
ath00020 Citrate cycle (TCA cycle) 11
ath01210 2-Oxocarboxylic acid metabolism 11
ath00010 Glycolysis / Gluconeogenesis 7
ath00620 Pyruvate metabolism 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00020 Citrate cycle (TCA cycle) 5
gma01200 Carbon metabolism 5
gma01210 2-Oxocarboxylic acid metabolism 5
gma00190 Oxidative phosphorylation 4
gma01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00020 Citrate cycle (TCA cycle) 10
gma01200 Carbon metabolism 10
gma01210 2-Oxocarboxylic acid metabolism 10
gma01230 Biosynthesis of amino acids 6
gma00785 Lipoic acid metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 11
sly00020 Citrate cycle (TCA cycle) 10
sly01210 2-Oxocarboxylic acid metabolism 7
sly00785 Lipoic acid metabolism 5
sly01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01200 Carbon metabolism 10
osa00020 Citrate cycle (TCA cycle) 9
osa01210 2-Oxocarboxylic acid metabolism 8
osa00010 Glycolysis / Gluconeogenesis 5
osa00620 Pyruvate metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01200 Carbon metabolism 11
osa00020 Citrate cycle (TCA cycle) 9
osa00190 Oxidative phosphorylation 7
osa01210 2-Oxocarboxylic acid metabolism 5
osa00620 Pyruvate metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01200 Carbon metabolism 11
zma00020 Citrate cycle (TCA cycle) 10
zma01210 2-Oxocarboxylic acid metabolism 10
zma01230 Biosynthesis of amino acids 6
zma00785 Lipoic acid metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01200 Carbon metabolism 11
zma00020 Citrate cycle (TCA cycle) 10
zma01210 2-Oxocarboxylic acid metabolism 10
zma01230 Biosynthesis of amino acids 6
zma00785 Lipoic acid metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00190 Oxidative phosphorylation 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01200 Carbon metabolism 9
vvi00020 Citrate cycle (TCA cycle) 7
vvi01210 2-Oxocarboxylic acid metabolism 6
vvi01230 Biosynthesis of amino acids 5
vvi00010 Glycolysis / Gluconeogenesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01200 Carbon metabolism 8
ppo00020 Citrate cycle (TCA cycle) 7
ppo01210 2-Oxocarboxylic acid metabolism 7
ppo04141 Protein processing in endoplasmic reticulum 6
ppo00620 Pyruvate metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01200 Carbon metabolism 11
mtr00020 Citrate cycle (TCA cycle) 9
mtr01210 2-Oxocarboxylic acid metabolism 7
mtr00190 Oxidative phosphorylation 5
mtr00010 Glycolysis / Gluconeogenesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00020 Citrate cycle (TCA cycle) 14
tae01200 Carbon metabolism 14
tae01210 2-Oxocarboxylic acid metabolism 14
tae00785 Lipoic acid metabolism 8
tae00010 Glycolysis / Gluconeogenesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00020 Citrate cycle (TCA cycle) 14
tae01200 Carbon metabolism 14
tae01210 2-Oxocarboxylic acid metabolism 14
tae00785 Lipoic acid metabolism 8
tae00630 Glyoxylate and dicarboxylate metabolism 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 12
hvu00020 Citrate cycle (TCA cycle) 8
hvu01210 2-Oxocarboxylic acid metabolism 7
hvu01230 Biosynthesis of amino acids 6
hvu00710 Carbon fixation by Calvin cycle 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00020 Citrate cycle (TCA cycle) 15
ghi01200 Carbon metabolism 9
ghi01210 2-Oxocarboxylic acid metabolism 8
ghi00010 Glycolysis / Gluconeogenesis 6
ghi00620 Pyruvate metabolism 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00020 Citrate cycle (TCA cycle) 15
ghi01200 Carbon metabolism 9
ghi01210 2-Oxocarboxylic acid metabolism 8
ghi00010 Glycolysis / Gluconeogenesis 6
ghi00620 Pyruvate metabolism 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00020 Citrate cycle (TCA cycle) 6
bna00630 Glyoxylate and dicarboxylate metabolism 6
bna01200 Carbon metabolism 6
bna01210 2-Oxocarboxylic acid metabolism 6
bna01230 Biosynthesis of amino acids 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00020 Citrate cycle (TCA cycle) 6
bna00630 Glyoxylate and dicarboxylate metabolism 6
bna01200 Carbon metabolism 6
bna01210 2-Oxocarboxylic acid metabolism 6
bna01230 Biosynthesis of amino acids 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01230 Biosynthesis of amino acids 6
cre01210 2-Oxocarboxylic acid metabolism 5
cre00220 Arginine biosynthesis 4
cre00190 Oxidative phosphorylation 3
cre01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00020 Citrate cycle (TCA cycle) 7
sbi01200 Carbon metabolism 7
sbi01210 2-Oxocarboxylic acid metabolism 5
sbi00010 Glycolysis / Gluconeogenesis 3
sbi00620 Pyruvate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01200 Carbon metabolism 11
sot00020 Citrate cycle (TCA cycle) 10
sot01210 2-Oxocarboxylic acid metabolism 8
sot00785 Lipoic acid metabolism 5
sot01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 11
cit03008 Ribosome biogenesis in eukaryotes 8
cit00190 Oxidative phosphorylation 3
cit01200 Carbon metabolism 3
cit01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01200 Carbon metabolism 11
bdi00020 Citrate cycle (TCA cycle) 7
bdi01210 2-Oxocarboxylic acid metabolism 6
bdi00620 Pyruvate metabolism 6
bdi01230 Biosynthesis of amino acids 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01200 Carbon metabolism 11
nta00010 Glycolysis / Gluconeogenesis 8
nta00620 Pyruvate metabolism 8
nta00020 Citrate cycle (TCA cycle) 6
nta01210 2-Oxocarboxylic acid metabolism 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01200 Carbon metabolism 10
nta00020 Citrate cycle (TCA cycle) 7
nta01210 2-Oxocarboxylic acid metabolism 6
nta00010 Glycolysis / Gluconeogenesis 6
nta00620 Pyruvate metabolism 6
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 819042 100781418 100499624 101249011 4328598 4350660 100279573 100194338 103866133 100261432 18094999 25486862 123144240 123136754 123401217 107905799 107913953 106438218 111215193 5728523 8071625 102595372 102577950 100821411 107791757 107779254
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