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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_15g641000v5   uncharacterized protein 
 ath-u.5   AT3G15970   NUP50 (Nucleoporin 50 kDa) protein 
 ath-u.5   AT1G52380   NUP50 (Nucleoporin 50 kDa) protein 
 gma-u.5   100816316   nuclear pore complex protein NUP50A 
 gma-u.5   100797325   nuclear pore complex protein NUP50A 
 sly-u.5   101248860   nuclear pore complex protein NUP50A 
 sly-u.5   101246934   nuclear pore complex protein NUP50A 
 osa-u.5   4338497   nuclear pore complex protein NUP50B 
 zma-u.5   100284246   uncharacterized LOC100284246 
 zma-u.5   100273971   Nuclear pore complex protein NUP50A 
 vvi-u.5   100265296   nuclear pore complex protein NUP50A 
 ppo-u.5   7486642   nuclear pore complex protein NUP50A 
 ppo-u.5   7478386   nuclear pore complex protein NUP50A 
 mtr-u.5   25491384   nuclear pore complex protein NUP50A 

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Top 50 coexpressed genes to CHLRE_15g641000v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_15g641000v5 (cre-r.1 coexpression data)

CoexMap"5728617"


creCHLRE_15g641000v5 | Entrez gene ID : 5728617    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 2 2 2 1 2 1 2 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0046907 [list] [network] intracellular transport  (317 genes)  IEA  
GO CC
GO:0005643 [list] [network] nuclear pore  (40 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (2907 genes)  IEA  
GO MF
GO:0005096 [list] [network] GTPase activator activity  (37 genes)  IEA  
Protein XP_042916514.1 [sequence] [blastp]
XP_042916515.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_042916514.1)
nucl 10  (predict for XP_042916515.1)
Subcellular
localization
TargetP
other 9  (predict for XP_042916514.1)
other 9  (predict for XP_042916515.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_15g641000v5

.
ath-u.5
for
AT3G15970

.
ath-u.5
for
AT1G52380

.
gma-u.5
for
100816316

.
gma-u.5
for
100797325

.
sly-u.5
for
101248860

.
sly-u.5
for
101246934

.
osa-u.5
for
4338497

.
zma-u.5
for
100284246

.
zma-u.5
for
100273971

.
vvi-u.5
for
100265296

.
ppo-u.5
for
7486642

.
ppo-u.5
for
7478386

.
mtr-u.5
for
25491384

.


Ortholog ID: 4380
Species ath ath gma gma sly sly osa zma zma bra vvi ppo ppo mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot sot cit bdi bdi nta nta
Symbol AT3G15970 AT1G52380 LOC100797325 LOC100816316 LOC101248860 LOC101246934 LOC4338497 LOC100273971 LOC100284246 LOC103868506 LOC100265296 LOC7478386 LOC7486642 LOC25491384 LOC123129102 LOC123156512 LOC123407230 LOC123441037 LOC107951895 LOC107951997 LOC106345735 LOC125609491 CHLRE_15g641000v5 LOC8069511 LOC8057557 LOC102602342 LOC102580884 LOC102623478 LOC100824162 LOC100823443 LOC107771430 LOC107801982
Function* NUP50 (Nucleoporin 50 kDa) protein NUP50 (Nucleoporin 50 kDa) protein nuclear pore complex protein NUP50A nuclear pore complex protein NUP50A nuclear pore complex protein NUP50A nuclear pore complex protein NUP50A nuclear pore complex protein NUP50B Nuclear pore complex protein NUP50A uncharacterized LOC100284246 nuclear pore complex protein NUP50A nuclear pore complex protein NUP50A nuclear pore complex protein NUP50A nuclear pore complex protein NUP50A nuclear pore complex protein NUP50A nuclear pore complex protein NUP50B nuclear pore complex protein NUP50A nuclear pore complex protein NUP50A-like nuclear pore complex protein NUP50A-like nuclear pore complex protein NUP50A nuclear pore complex protein NUP50A nuclear pore complex protein NUP50A nuclear pore complex protein NUP50A-like uncharacterized protein nuclear pore complex protein NUP50A nuclear pore complex protein NUP50B nuclear pore complex protein NUP50A nuclear pore complex protein NUP50A-like nuclear pore complex protein NUP50A nuclear pore complex protein NUP50A nuclear pore complex protein NUP50A nuclear pore complex protein NUP50B nuclear pore complex protein NUP50B
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 2
gma03083 Polycomb repressive complex 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00520 Amino sugar and nucleotide sugar metabolism 2
sly01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 3
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 5
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 4
mtr03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00970 Aminoacyl-tRNA biosynthesis 3
hvu03013 Nucleocytoplasmic transport 3
hvu03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 2
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 2
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 2
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 3
cit03010 Ribosome 2
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 2
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 6
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820841 841668 100797325 100816316 101248860 101246934 4338497 100273971 100284246 103868506 100265296 7478386 7486642 25491384 123129102 123156512 123407230 123441037 107951895 107951997 106345735 125609491 5728617 8069511 8057557 102602342 102580884 102623478 100824162 100823443 107771430 107801982
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