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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_12g560300v5   uncharacterized protein 
 ath-u.5   AT3G07810   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-u.5   AT5G47620   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-u.5   AT1G17640   RNA-binding (RRM/RBD/RNP motifs) family protein 
 gma-u.5   100818080   heterogeneous nuclear ribonucleoprotein 1 
 gma-u.5   100788515   heterogeneous nuclear ribonucleoprotein 1 
 gma-u.5   100795907   heterogeneous nuclear ribonucleoprotein 1 
 sly-u.5   101260528   heterogeneous nuclear ribonucleoprotein 1 
 sly-u.5   101263390   heterogeneous nuclear ribonucleoprotein 1-like 
 sly-u.5   101261462   heterogeneous nuclear ribonucleoprotein 1 
 osa-u.5   4343740   heterogeneous nuclear ribonucleoprotein 1 
 osa-u.5   4328758   uncharacterized LOC4328758 
 osa-u.5   4341330   uncharacterized LOC4341330 
 zma-u.5   100382538   uncharacterized LOC100382538 
 zma-u.5   103632085   heterogeneous nuclear ribonucleoprotein 1 
 zma-u.5   100279976   uncharacterized LOC100279976 
 vvi-u.5   100246008   heterogeneous nuclear ribonucleoprotein 1 
 vvi-u.5   100267443   heterogeneous nuclear ribonucleoprotein 1 
 ppo-u.5   7458520   heterogeneous nuclear ribonucleoprotein 1 
 ppo-u.5   18096800   heterogeneous nuclear ribonucleoprotein 1 
 ppo-u.5   18094817   heterogeneous nuclear ribonucleoprotein 1 
 mtr-u.5   11438007   heterogeneous nuclear ribonucleoprotein 1 
 mtr-u.5   11424064   heterogeneous nuclear ribonucleoprotein 1 
 mtr-u.5   11416649   heterogeneous nuclear ribonucleoprotein 1 

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Top 50 coexpressed genes to CHLRE_12g560300v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_12g560300v5 (cre-r.1 coexpression data)

CoexMap"5728673"


creCHLRE_12g560300v5 | Entrez gene ID : 5728673    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 3 3 3 3 3 2 3 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (670 genes)  IEA  
Protein XP_001703133.2 [sequence] [blastp]
XP_042918840.1 [sequence] [blastp]
XP_042918841.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  cyto 2  (predict for XP_001703133.2)
nucl 8,  cyto 2  (predict for XP_042918840.1)
nucl 8,  cyto 2  (predict for XP_042918841.1)
Subcellular
localization
TargetP
other 9  (predict for XP_001703133.2)
other 9  (predict for XP_042918840.1)
other 9  (predict for XP_042918841.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_12g560300v5

.
ath-u.5
for
AT3G07810

.
ath-u.5
for
AT5G47620

.
ath-u.5
for
AT1G17640

.
gma-u.5
for
100818080

.
gma-u.5
for
100788515

.
gma-u.5
for
100795907

.
sly-u.5
for
101260528

.
sly-u.5
for
101263390

.
sly-u.5
for
101261462

.
osa-u.5
for
4343740

.
osa-u.5
for
4328758

.
osa-u.5
for
4341330

.
zma-u.5
for
100382538

.
zma-u.5
for
103632085

.
zma-u.5
for
100279976

.
vvi-u.5
for
100246008

.
vvi-u.5
for
100267443

.
ppo-u.5
for
7458520

.
ppo-u.5
for
18096800

.
ppo-u.5
for
18094817

.
mtr-u.5
for
11438007

.
mtr-u.5
for
11424064

.
mtr-u.5
for
11416649

.


Ortholog ID: 460
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre cre sbi sot sot cit cit bdi bdi nta nta
Symbol AT3G07810 AT1G17640 LOC100795907 LOC100805131 LOC101260293 LOC101263390 LOC4350986 LOC4328758 LOC100216861 LOC103647784 LOC103853827 LOC103839516 LOC100267443 LOC7485083 LOC18096800 LOC11424064 LOC11416649 LOC123137028 LOC123172617 LOC123413593 LOC123448455 LOC107917827 LOC107950090 LOC106388995 LOC106419742 CHLRE_12g560300v5 CHLRE_07g330300v5 LOC8085536 LOC102593107 LOC102581600 LOC102624019 LOC102614891 LOC100831046 LOC100837968 LOC107773440 LOC107762949
Function* RNA-binding (RRM/RBD/RNP motifs) family protein RNA-binding (RRM/RBD/RNP motifs) family protein heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1-like heterogeneous nuclear ribonucleoprotein 1 uncharacterized LOC4328758 uncharacterized LOC100216861 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein A0 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1-like heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1-like heterogeneous nuclear ribonucleoprotein 1 uncharacterized protein uncharacterized protein heterogeneous nuclear ribonucleoprotein A3 heterogeneous nuclear ribonucleoprotein 1-like heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein 1 heterogeneous nuclear ribonucleoprotein A0 heterogeneous nuclear ribonucleoprotein A0 uncharacterized LOC107773440 heterogeneous nuclear ribonucleoprotein 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 6
gma00010 Glycolysis / Gluconeogenesis 2
gma00020 Citrate cycle (TCA cycle) 2
gma00620 Pyruvate metabolism 2
gma00785 Lipoic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 5
sly00010 Glycolysis / Gluconeogenesis 2
sly00052 Galactose metabolism 2
sly00500 Starch and sucrose metabolism 2
sly00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 6
sly03250 Viral life cycle - HIV-1 3
sly03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 3
osa03015 mRNA surveillance pathway 2
osa00190 Oxidative phosphorylation 2
osa00020 Citrate cycle (TCA cycle) 2
osa00640 Propanoate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 6
osa03015 mRNA surveillance pathway 3
osa03250 Viral life cycle - HIV-1 2
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 5
zma04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 3
vvi01250 Biosynthesis of nucleotide sugars 2
vvi04142 Lysosome 2
vvi04144 Endocytosis 2
vvi05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04144 Endocytosis 3
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00561 Glycerolipid metabolism 2
mtr00564 Glycerophospholipid metabolism 2
mtr00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 9
tae03013 Nucleocytoplasmic transport 3
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 3
hvu03015 mRNA surveillance pathway 2
hvu00020 Citrate cycle (TCA cycle) 2
hvu00630 Glyoxylate and dicarboxylate metabolism 2
hvu01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
ghi02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 12
ghi00061 Fatty acid biosynthesis 2
ghi00071 Fatty acid degradation 2
ghi01212 Fatty acid metabolism 2
ghi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 4
sbi03015 mRNA surveillance pathway 3
sbi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 4
sot00541 Biosynthesis of various nucleotide sugars 2
sot01250 Biosynthesis of nucleotide sugars 2
sot00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 4
cit04142 Lysosome 2
cit03015 mRNA surveillance pathway 2
cit04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 7
bdi03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 9
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00562 Inositol phosphate metabolism 4
nta04070 Phosphatidylinositol signaling system 4
nta04144 Endocytosis 4
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 10
nta00520 Amino sugar and nucleotide sugar metabolism 2
nta01250 Biosynthesis of nucleotide sugars 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 819972 838341 100795907 100805131 101260293 101263390 4350986 4328758 100216861 103647784 103853827 103839516 100267443 7485083 18096800 11424064 11416649 123137028 123172617 123413593 123448455 107917827 107950090 106388995 106419742 5728673 5716178 8085536 102593107 102581600 102624019 102614891 100831046 100837968 107773440 107762949
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