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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_03g172950v5   uncharacterized protein 
 ath-u.5   NAP57   homologue of NAP57 
 gma-u.5   100806355   H/ACA ribonucleoprotein complex subunit 4 
 gma-u.5   100780706   H/ACA ribonucleoprotein complex subunit 4 
 sly-u.5   101255259   H/ACA ribonucleoprotein complex subunit 4 
 osa-u.5   4344029   H/ACA ribonucleoprotein complex subunit 4 
 osa-u.5   4332935   H/ACA ribonucleoprotein complex subunit 4 
 zma-u.5   107521957   uncharacterized LOC107521957 
 zma-u.5   103649956   H/ACA ribonucleoprotein complex subunit 4 
 zma-u.5   100502498   H/ACA ribonucleoprotein complex subunit 4 
 vvi-u.5   100258019   H/ACA ribonucleoprotein complex subunit 4 
 ppo-u.5   7458946   H/ACA ribonucleoprotein complex subunit 4 
 ppo-u.5   7473584   H/ACA ribonucleoprotein complex subunit 4 
 mtr-u.5   25492817   H/ACA ribonucleoprotein complex subunit 4 

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Top 50 coexpressed genes to CHLRE_03g172950v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_03g172950v5 (cre-r.1 coexpression data)

CoexMap"5728904"


creCHLRE_03g172950v5 | Entrez gene ID : 5728904      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 1 2 3 1 2 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03008 [list] [network] Ribosome biogenesis in eukaryotes (47 genes)
GO BP
GO:0000495 [list] [network] box H/ACA sno(s)RNA 3'-end processing  (2 genes)  IEA  
GO:0031120 [list] [network] snRNA pseudouridine synthesis  (4 genes)  IEA  
GO:0031118 [list] [network] rRNA pseudouridine synthesis  (7 genes)  IEA  
GO:1990481 [list] [network] mRNA pseudouridine synthesis  (8 genes)  IEA  
GO CC
GO:0031429 [list] [network] box H/ACA snoRNP complex  (7 genes)  IEA  
GO MF
GO:0009982 [list] [network] pseudouridine synthase activity  (23 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (670 genes)  IEA  
Protein XP_001703300.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 7,  nucl 2  (predict for XP_001703300.2)
Subcellular
localization
TargetP
other 9  (predict for XP_001703300.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_03g172950v5

.
ath-u.5
for
NAP57

.
gma-u.5
for
100806355

.
gma-u.5
for
100780706

.
sly-u.5
for
101255259

.
osa-u.5
for
4344029

.
osa-u.5
for
4332935

.
zma-u.5
for
107521957

.
zma-u.5
for
103649956

.
zma-u.5
for
100502498

.
vvi-u.5
for
100258019

.
ppo-u.5
for
7458946

.
ppo-u.5
for
7473584

.
mtr-u.5
for
25492817

.


Ortholog ID: 5332
Species ath gma gma sly osa osa zma zma bra bra vvi ppo ppo mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot cit bdi bdi nta nta
Symbol NAP57 LOC100780706 LOC100806355 LOC101255259 LOC4332935 LOC4344029 LOC103649956 LOC107521957 LOC103830088 LOC103853527 LOC100258019 LOC7458946 LOC7473584 LOC25492817 LOC123187822 LOC123187823 LOC123425131 LOC123425133 LOC107889430 LOC107891348 LOC106353240 LOC106401912 CHLRE_03g172950v5 LOC8079384 LOC8072420 LOC102596957 LOC102608573 LOC100832816 LOC100838391 LOC107765583 LOC107814582
Function* homologue of NAP57 H/ACA ribonucleoprotein complex subunit 4 H/ACA ribonucleoprotein complex subunit 4 H/ACA ribonucleoprotein complex subunit 4 H/ACA ribonucleoprotein complex subunit 4 H/ACA ribonucleoprotein complex subunit 4 H/ACA ribonucleoprotein complex subunit 4 uncharacterized LOC107521957 H/ACA ribonucleoprotein complex subunit 4 H/ACA ribonucleoprotein complex subunit 4 H/ACA ribonucleoprotein complex subunit 4 H/ACA ribonucleoprotein complex subunit 4 H/ACA ribonucleoprotein complex subunit 4 H/ACA ribonucleoprotein complex subunit 4 H/ACA ribonucleoprotein complex subunit 4 H/ACA ribonucleoprotein complex subunit 4 H/ACA ribonucleoprotein complex subunit 4-like H/ACA ribonucleoprotein complex subunit 4-like H/ACA ribonucleoprotein complex subunit 4 H/ACA ribonucleoprotein complex subunit 4 H/ACA ribonucleoprotein complex subunit 4 H/ACA ribonucleoprotein complex subunit 4-like uncharacterized protein H/ACA ribonucleoprotein complex subunit 4 H/ACA ribonucleoprotein complex subunit 4 H/ACA ribonucleoprotein complex subunit 4 H/ACA ribonucleoprotein complex subunit 4 H/ACA ribonucleoprotein complex subunit 4 H/ACA ribonucleoprotein complex subunit 4 H/ACA ribonucleoprotein complex subunit 4 H/ACA ribonucleoprotein complex subunit 4-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 4
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 9
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 5
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 6
tae03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 8
nta03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 8
nta03010 Ribosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824882 100780706 100806355 101255259 4332935 4344029 103649956 107521957 103830088 103853527 100258019 7458946 7473584 25492817 123187822 123187823 123425131 123425133 107889430 107891348 106353240 106401912 5728904 8079384 8072420 102596957 102608573 100832816 100838391 107765583 107814582
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