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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_17g746347v5   uncharacterized protein 
 ath-u.5   UNG   uracil dna glycosylase 
 gma-u.5   100818241   uracil-DNA glycosylase, mitochondrial 
 gma-u.5   100818039   uracil-DNA glycosylase, mitochondrial 
 sly-u.5   101255344   uracil-DNA glycosylase, mitochondrial 
 osa-u.5   4337373   uracil-DNA glycosylase, mitochondrial 
 zma-u.5   100284406   uracil-DNA glycosylase 
 vvi-u.5   100253025   uracil-DNA glycosylase, mitochondrial 
 ppo-u.5   7481588   uracil-DNA glycosylase, mitochondrial 
 mtr-u.5   25492833   uracil-DNA glycosylase, mitochondrial 

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Top 50 coexpressed genes to CHLRE_17g746347v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_17g746347v5 (cre-r.1 coexpression data)

CoexMap"5729130"


creCHLRE_17g746347v5 | Entrez gene ID : 5729130    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03410 [list] [network] Base excision repair (25 genes)
GO BP
GO:0097510 [list] [network] base-excision repair, AP site formation via deaminated base removal  (1 genes)  IEA  
GO:0006284 [list] [network] base-excision repair  (17 genes)  IEA  
GO CC
GO:0005739 [list] [network] mitochondrion  (441 genes)  IEA  
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO MF
GO:0004844 [list] [network] uracil DNA N-glycosylase activity  (1 genes)  IEA  
Protein XP_001703582.2 [sequence] [blastp]
XP_042915215.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  nucl_plas 4,  chlo 1  (predict for XP_001703582.2)
nucl 8,  nucl_plas 5,  plas 1  (predict for XP_042915215.1)
Subcellular
localization
TargetP
other 7,  chlo 3  (predict for XP_001703582.2)
other 7,  chlo 3  (predict for XP_042915215.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_17g746347v5

.
ath-u.5
for
UNG

.
gma-u.5
for
100818241

.
gma-u.5
for
100818039

.
sly-u.5
for
101255344

.
osa-u.5
for
4337373

.
zma-u.5
for
100284406

.
vvi-u.5
for
100253025

.
ppo-u.5
for
7481588

.
mtr-u.5
for
25492833

.


Ortholog ID: 7505
Species ath gma gma sly osa zma vvi ppo tae tae hvu ghi ghi bna cre sbi sot cit bdi nta nta
Symbol UNG LOC100818241 LOC100818039 LOC101255344 LOC4337373 LOC100284406 LOC100253025 LOC7481588 LOC123055149 LOC123047347 LOC123428381 LOC107946297 LOC107916773 LOC106391296 CHLRE_17g746347v5 LOC110436167 LOC102588365 LOC102619856 LOC100844435 LOC107779662 LOC107775877
Function* uracil dna glycosylase uracil-DNA glycosylase, mitochondrial uracil-DNA glycosylase, mitochondrial uracil-DNA glycosylase, mitochondrial uracil-DNA glycosylase, mitochondrial uracil-DNA glycosylase uracil-DNA glycosylase, mitochondrial uracil-DNA glycosylase, mitochondrial uracil-DNA glycosylase, mitochondrial uracil-DNA glycosylase, mitochondrial uracil-DNA glycosylase, mitochondrial uracil-DNA glycosylase, mitochondrial uracil-DNA glycosylase, mitochondrial uracil-DNA glycosylase, mitochondrial uncharacterized protein uracil-DNA glycosylase, mitochondrial uracil-DNA glycosylase, mitochondrial uracil-DNA glycosylase, mitochondrial uracil-DNA glycosylase, mitochondrial uracil-DNA glycosylase, mitochondrial-like uracil-DNA glycosylase, mitochondrial
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 5
ath03440 Homologous recombination 2
ath03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03440 Homologous recombination 3
gma03410 Base excision repair 2
gma03013 Nucleocytoplasmic transport 2
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 2
gma03410 Base excision repair 2
gma04120 Ubiquitin mediated proteolysis 2
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03410 Base excision repair 3
sly03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03018 RNA degradation 2
osa03008 Ribosome biogenesis in eukaryotes 2
osa01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03030 DNA replication 3
vvi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
ppo04075 Plant hormone signal transduction 3
ppo04016 MAPK signaling pathway - plant 2
ppo03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 7
tae04075 Plant hormone signal transduction 5
tae03018 RNA degradation 3
tae03410 Base excision repair 3
tae03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 2
tae03015 mRNA surveillance pathway 2
tae03040 Spliceosome 2
tae00330 Arginine and proline metabolism 2
tae00410 beta-Alanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 13
ghi03410 Base excision repair 4
ghi03420 Nucleotide excision repair 2
ghi03430 Mismatch repair 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 13
ghi03410 Base excision repair 4
ghi03420 Nucleotide excision repair 2
ghi03430 Mismatch repair 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 4
bna03430 Mismatch repair 4
bna03440 Homologous recombination 4
bna03013 Nucleocytoplasmic transport 2
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 2
cre03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 4
cit00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03018 RNA degradation 3
bdi03030 DNA replication 3
bdi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 2
nta03410 Base excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821394 100818241 100818039 101255344 4337373 100284406 100253025 7481588 123055149 123047347 123428381 107946297 107916773 106391296 5729130 110436167 102588365 102619856 100844435 107779662 107775877
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