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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_01g032100v5   uncharacterized protein 
 ath-u.5   ATCSA-1   Transducin/WD40 repeat-like superfamily protein 
 gma-u.5   100815581   WD repeat-containing protein ATCSA-1 
 gma-u.5   100790433   WD repeat-containing protein ATCSA-1 
 sly-u.5   101255378   WD repeat-containing protein ATCSA-1 
 osa-u.5   4324761   WD repeat-containing protein ATCSA-1 
 osa-u.5   4329118   WD repeat-containing protein ATCSA-1 
 zma-u.5   100275606   uncharacterized LOC100275606 
 vvi-u.5   100247086   WD repeat-containing protein ATCSA-1 
 ppo-u.5   7497327   WD repeat-containing protein ATCSA-1 
 mtr-u.5   25489968   WD repeat-containing protein ATCSA-1 

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Top 50 coexpressed genes to CHLRE_01g032100v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_01g032100v5 (cre-r.1 coexpression data)

CoexMap"66052081"


creCHLRE_01g032100v5 | Entrez gene ID : 66052081    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03420 [list] [network] Nucleotide excision repair (42 genes)
cre04120 [list] [network] Ubiquitin mediated proteolysis (48 genes)
GO BP
GO:0006283 [list] [network] transcription-coupled nucleotide-excision repair  (4 genes)  IEA  
GO:0000209 [list] [network] protein polyubiquitination  (40 genes)  IEA  
GO:0043161 [list] [network] proteasome-mediated ubiquitin-dependent protein catabolic process  (98 genes)  IEA  
GO CC
GO:0031464 [list] [network] Cul4A-RING E3 ubiquitin ligase complex  (5 genes)  IEA  
GO:0000109 [list] [network] nucleotide-excision repair complex  (6 genes)  IEA  
GO MF
GO:0005515 [list] [network] protein binding  (1927 genes)  IEA  
Protein XP_042928568.1 [sequence] [blastp]
Subcellular
localization
wolf
extr 7,  pero 1,  chlo 1,  cyto 1  (predict for XP_042928568.1)
Subcellular
localization
TargetP
other 6,  scret 3  (predict for XP_042928568.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_01g032100v5

.
ath-u.5
for
ATCSA-1

.
gma-u.5
for
100815581

.
gma-u.5
for
100790433

.
sly-u.5
for
101255378

.
osa-u.5
for
4324761

.
osa-u.5
for
4329118

.
zma-u.5
for
100275606

.
vvi-u.5
for
100247086

.
ppo-u.5
for
7497327

.
mtr-u.5
for
25489968

.


Ortholog ID: 8703
Species ath gma gma sly osa osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre cre sbi sot cit bdi nta nta
Symbol ATCSA-1 LOC100790433 LOC100815581 LOC101255378 LOC4324761 LOC4329118 LOC100275606 LOC103839014 LOC100247086 LOC7497327 LOC25489968 LOC123062660 LOC123079817 LOC123444848 LOC107957912 LOC107958189 LOC106367306 LOC106431654 CHLRE_01g032139v5 CHLRE_01g032100v5 LOC8058940 LOC102590960 LOC102614817 LOC100837859 LOC107769413 LOC107816950
Function* Transducin/WD40 repeat-like superfamily protein WD repeat-containing protein ATCSA-1 WD repeat-containing protein ATCSA-1 WD repeat-containing protein ATCSA-1 WD repeat-containing protein ATCSA-1 WD repeat-containing protein ATCSA-1 uncharacterized LOC100275606 WD repeat-containing protein ATCSA-1 WD repeat-containing protein ATCSA-1 WD repeat-containing protein ATCSA-1 WD repeat-containing protein ATCSA-1 WD repeat-containing protein ATCSA-1 WD repeat-containing protein ATCSA-1 WD repeat-containing protein ATCSA-1-like WD repeat-containing protein ATCSA-1 WD repeat-containing protein ATCSA-1 WD repeat-containing protein ATCSA-1 WD repeat-containing protein ATCSA-1 uncharacterized protein uncharacterized protein DNA excision repair protein ERCC-8 DNA excision repair protein ERCC-8 WD repeat-containing protein ATCSA-1-like DNA excision repair protein ERCC-8 WD repeat-containing protein ATCSA-1 WD repeat-containing protein ATCSA-1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04016 MAPK signaling pathway - plant 2
gma04075 Plant hormone signal transduction 2
gma03420 Nucleotide excision repair 2
gma04120 Ubiquitin mediated proteolysis 2
gma00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03420 Nucleotide excision repair 2
gma04120 Ubiquitin mediated proteolysis 2
gma04016 MAPK signaling pathway - plant 2
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00280 Valine, leucine and isoleucine degradation 4
sly00310 Lysine degradation 2
sly00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 3
bra04120 Ubiquitin mediated proteolysis 2
bra04382 Cornified envelope formation 2
bra04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03420 Nucleotide excision repair 3
tae04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03420 Nucleotide excision repair 3
tae04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03420 Nucleotide excision repair 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi00650 Butanoate metabolism 2
ghi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03420 Nucleotide excision repair 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi00650 Butanoate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 2
bna03420 Nucleotide excision repair 2
bna04120 Ubiquitin mediated proteolysis 2
bna03040 Spliceosome 2
bna04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03420 Nucleotide excision repair 2
bna04120 Ubiquitin mediated proteolysis 2
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 2
sot04136 Autophagy - other 2
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00290 Valine, leucine and isoleucine biosynthesis 2
nta00770 Pantothenate and CoA biosynthesis 2
nta01210 2-Oxocarboxylic acid metabolism 2
nta01230 Biosynthesis of amino acids 2
nta03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00290 Valine, leucine and isoleucine biosynthesis 2
nta00770 Pantothenate and CoA biosynthesis 2
nta01210 2-Oxocarboxylic acid metabolism 2
nta01230 Biosynthesis of amino acids 2
nta03420 Nucleotide excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 839677 100790433 100815581 101255378 4324761 4329118 100275606 103839014 100247086 7497327 25489968 123062660 123079817 123444848 107957912 107958189 106367306 106431654 5715396 66052081 8058940 102590960 102614817 100837859 107769413 107816950
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