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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_01g046237v5   uncharacterized protein 
 ath-u.5   AT3G20010   SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 
 ath-u.5   AT1G11100   SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 
 gma-u.5   100805307   helicase-like transcription factor CHR28 
 gma-u.5   100527790   uncharacterized LOC100527790 
 gma-u.5   100795142   helicase-like transcription factor CHR28 
 sly-u.5   101251257   helicase-like transcription factor CHR28 
 sly-u.5   101243943   chromodomain-helicase-DNA-binding protein 3 
 osa-u.5   4326436   helicase-like transcription factor CHR28 
 osa-u.5   4337089   helicase-like transcription factor CHR28 
 osa-u.5   4344820   helicase-like transcription factor CHR28 
 zma-u.5   103642087   Putative SNF2-domain/RING finger domain/helicase domain protein 
 zma-u.5   100216734   uncharacterized LOC100216734 
 zma-u.5   103636595   helicase-like transcription factor CHR28 
 vvi-u.5   100256075   helicase-like transcription factor CHR28 
 vvi-u.5   100265351   helicase-like transcription factor CHR28 
 ppo-u.5   7490807   helicase-like transcription factor CHR28 
 ppo-u.5   7485570   helicase-like transcription factor CHR28 
 mtr-u.5   11428547   helicase-like transcription factor CHR28 
 mtr-u.5   25485683   helicase-like transcription factor CHR28 

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Top 50 coexpressed genes to CHLRE_01g046237v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_01g046237v5 (cre-r.1 coexpression data)

CoexMap"66052140"


creCHLRE_01g046237v5 | Entrez gene ID : 66052140    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 2 3 2 3 3 2 2 2 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0140658 [list] [network] ATP-dependent chromatin remodeler activity  (31 genes)  IEA  
GO:0046872 [list] [network] metal ion binding  (704 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (1223 genes)  IEA  
Protein XP_042928804.1 [sequence] [blastp]
XP_042928805.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  cyto 1,  mito 1  (predict for XP_042928804.1)
chlo 6,  cyto 1,  mito 1  (predict for XP_042928805.1)
Subcellular
localization
TargetP
mito 8,  chlo 3  (predict for XP_042928804.1)
mito 8,  chlo 3  (predict for XP_042928805.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_01g046237v5

.
ath-u.5
for
AT3G20010

.
ath-u.5
for
AT1G11100

.
gma-u.5
for
100805307

.
gma-u.5
for
100527790

.
gma-u.5
for
100795142

.
sly-u.5
for
101251257

.
sly-u.5
for
101243943

.
osa-u.5
for
4326436

.
osa-u.5
for
4337089

.
osa-u.5
for
4344820

.
zma-u.5
for
103642087

.
zma-u.5
for
100216734

.
zma-u.5
for
103636595

.
vvi-u.5
for
100256075

.
vvi-u.5
for
100265351

.
ppo-u.5
for
7490807

.
ppo-u.5
for
7485570

.
mtr-u.5
for
11428547

.
mtr-u.5
for
25485683

.


Ortholog ID: 1204
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sot sot cit cit bdi bdi nta nta
Symbol AT1G11100 AT3G20010 LOC100795142 LOC100792901 LOC101243943 LOC101251257 LOC4326436 LOC4337089 LOC103636595 LOC100216734 LOC103830370 LOC103871349 LOC100256075 LOC100265351 LOC7497758 LOC7485570 LOC25485683 LOC11428547 LOC123165699 LOC123070991 LOC123412809 LOC123444563 LOC107898881 LOC107886866 LOC111198490 LOC106389298 CHLRE_01g046237v5 LOC8069687 LOC102606384 LOC102599898 LOC102616342 LOC102614358 LOC100844834 LOC100844087 LOC107819790 LOC107819811
Function* SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein helicase-like transcription factor CHR28 helicase-like transcription factor CHR28 chromodomain-helicase-DNA-binding protein 3 helicase-like transcription factor CHR28 helicase-like transcription factor CHR28 helicase-like transcription factor CHR28 helicase-like transcription factor CHR28 uncharacterized LOC100216734 helicase-like transcription factor CHR28 helicase-like transcription factor CHR28 helicase-like transcription factor CHR28 helicase-like transcription factor CHR28 helicase-like transcription factor CHR28 helicase-like transcription factor CHR28 helicase-like transcription factor CHR28 helicase-like transcription factor CHR28 helicase-like transcription factor CHR28 helicase-like transcription factor CHR28 helicase-like transcription factor CHR28 helicase-like transcription factor CHR28 helicase-like transcription factor CHR28 helicase-like transcription factor CHR28 helicase-like transcription factor CHR27 helicase-like transcription factor CHR27 uncharacterized protein helicase-like transcription factor CHR28 putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 uncharacterized ATP-dependent helicase C23E6.02 helicase-like transcription factor CHR28 helicase-like transcription factor CHR28 helicase-like transcription factor CHR28 helicase-like transcription factor CHR28 helicase-like transcription factor CHR28 uncharacterized LOC107819811
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04141 Protein processing in endoplasmic reticulum 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 3
ath03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 5
sly03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00562 Inositol phosphate metabolism 2
zma04070 Phosphatidylinositol signaling system 2
zma04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 3
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04136 Autophagy - other 2
tae04518 Integrin signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00310 Lysine degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03083 Polycomb repressive complex 4
ghi03250 Viral life cycle - HIV-1 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04148 Efferocytosis 3
sot04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 2
bdi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 2
nta04626 Plant-pathogen interaction 2
nta00562 Inositol phosphate metabolism 2
nta04070 Phosphatidylinositol signaling system 2
nta04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 2
nta04626 Plant-pathogen interaction 2
nta04144 Endocytosis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837651 821539 100795142 100792901 101243943 101251257 4326436 4337089 103636595 100216734 103830370 103871349 100256075 100265351 7497758 7485570 25485683 11428547 123165699 123070991 123412809 123444563 107898881 107886866 111198490 106389298 66052140 8069687 102606384 102599898 102616342 102614358 100844834 100844087 107819790 107819811
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