Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_04g227750v5   uncharacterized protein 
 ath-u.5   GR1   protein gamma response 1 
 gma-u.5   100797086   protein gamma response 1 
 sly-u.5   101261556   protein gamma response 1 
 zma-u.5   100278695   uncharacterized LOC100278695 
 vvi-u.5   100855359   protein gamma response 1 
 ppo-u.5   7480093   protein gamma response 1 
 ppo-u.5   7475054   protein gamma response 1 
 mtr-u.5   11445150   protein gamma response 1 

close


Top 50 coexpressed genes to CHLRE_04g227750v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to CHLRE_04g227750v5 (cre-r.1 coexpression data)

CoexMap"66053292"


creCHLRE_04g227750v5 | Entrez gene ID : 66053292    
Species cre ath gma sly zma vvi ppo mtr sbi nta bra osa hvu cit bdi sot tae bna ghi
Paralog 1 1 1 1 1 1 2 1 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010792 [list] [network] DNA double-strand break processing involved in repair via single-strand annealing  (1 genes)  IEA  
GO:0000724 [list] [network] double-strand break repair via homologous recombination  (82 genes)  IEA  
GO CC
GO:0035861 [list] [network] site of double-strand break  (11 genes)  IEA  
GO MF
GO:0000403 [list] [network] Y-form DNA binding  (1 genes)  IEA  
GO:0000406 [list] [network] double-strand/single-strand DNA junction binding  (1 genes)  IEA  
GO:0070336 [list] [network] flap-structured DNA binding  (2 genes)  IEA  
GO:0003684 [list] [network] damaged DNA binding  (27 genes)  IEA  
GO:0003697 [list] [network] single-stranded DNA binding  (46 genes)  IEA  
GO:0003690 [list] [network] double-stranded DNA binding  (175 genes)  IEA  
Protein XP_042925393.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 3,  cysk_nucl 2,  chlo 1,  vacu 1,  cyto 1,  chlo_mito 1,  cyto_pero 1  (predict for XP_042925393.1)
Subcellular
localization
TargetP
other 4  (predict for XP_042925393.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_04g227750v5

.
ath-u.5
for
GR1

.
gma-u.5
for
100797086

.
sly-u.5
for
101261556

.
zma-u.5
for
100278695

.
vvi-u.5
for
100855359

.
ppo-u.5
for
7480093

.
ppo-u.5
for
7475054

.
mtr-u.5
for
11445150

.


Ortholog ID: 9532
Species ath gma sly zma bra vvi ppo ppo mtr tae tae hvu hvu ghi ghi bna bna cre sbi cit bdi nta nta
Symbol GR1 LOC100797086 LOC101261556 LOC100278695 LOC103863489 LOC100855359 LOC7480093 LOC7475054 LOC11445150 LOC123060500 LOC123069050 LOC123443014 LOC123443065 LOC107892000 LOC107916929 LOC106392342 LOC106445669 CHLRE_04g227750v5 LOC8067645 LOC102625466 LOC100829576 LOC107791449 LOC107803524
Function* protein gamma response 1 protein gamma response 1 protein gamma response 1 uncharacterized LOC100278695 protein gamma response 1 protein gamma response 1 protein gamma response 1 protein gamma response 1 protein gamma response 1 protein gamma response 1 protein gamma response 1 protein gamma response 1 uncharacterized LOC123443065 protein gamma response 1 protein gamma response 1 protein gamma response 1 protein gamma response 1-like uncharacterized protein protein gamma response 1 protein gamma response 1 protein gamma response 1 protein gamma response 1-like protein gamma response 1
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03440 Homologous recombination 6
ath03030 DNA replication 4
ath03460 Fanconi anemia pathway 4
ath03420 Nucleotide excision repair 3
ath00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 6
gma04141 Protein processing in endoplasmic reticulum 5
gma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03030 DNA replication 4
zma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01250 Biosynthesis of nucleotide sugars 3
vvi04814 Motor proteins 2
vvi00541 Biosynthesis of various nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03440 Homologous recombination 4
ppo03460 Fanconi anemia pathway 3
ppo03030 DNA replication 2
ppo03420 Nucleotide excision repair 2
ppo03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04814 Motor proteins 2
mtr03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04141 Protein processing in endoplasmic reticulum 2
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 9
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00230 Purine metabolism 4
bna00240 Pyrimidine metabolism 4
bna00480 Glutathione metabolism 4
bna01232 Nucleotide metabolism 4
bna03030 DNA replication 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00230 Purine metabolism 4
bna00240 Pyrimidine metabolism 4
bna00480 Glutathione metabolism 4
bna01232 Nucleotide metabolism 4
bna03030 DNA replication 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00230 Purine metabolism 2
sbi00240 Pyrimidine metabolism 2
sbi00480 Glutathione metabolism 2
sbi01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03030 DNA replication 4
bdi03410 Base excision repair 2
bdi03420 Nucleotide excision repair 2
bdi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04814 Motor proteins 4
nta03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04814 Motor proteins 6
nta00270 Cysteine and methionine metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824375 100797086 101261556 100278695 103863489 100855359 7480093 7475054 11445150 123060500 123069050 123443014 123443065 107892000 107916929 106392342 106445669 66053292 8067645 102625466 100829576 107791449 107803524
The preparation time of this page was 0.1 [sec].