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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_06g292450v5   uncharacterized protein 
 ath-u.5   AT1G20370   Pseudouridine synthase family protein 
 ath-u.5   AT1G76120   Pseudouridine synthase family protein 
 gma-u.5   100811976   tRNA pseudouridine synthase A 
 gma-u.5   100778978   tRNA pseudouridine synthase A 
 sly-u.5   101250299   uncharacterized LOC101250299 
 osa-u.5   4330262   uncharacterized LOC4330262 
 zma-u.5   100283773   Pseudouridine synthase family protein 
 bra-r.6   103832059   tRNA pseudouridine synthase 1 
 vvi-u.5   100267766   uncharacterized LOC100267766 
 ppo-u.5   7490609   uncharacterized LOC7490609 
 ppo-u.5   7485628   uncharacterized LOC7485628 
 mtr-u.5   11442694   tRNA pseudouridine synthase A 
 mtr-u.5   11440088   tRNA pseudouridine synthase A 
 tae-r.2   123145056   tRNA pseudouridine synthase A 
 tae-r.2   123137671   tRNA pseudouridine synthase A 
 tae-r.2   123127959   tRNA pseudouridine synthase A 
 hvu-r.1   123401341   tRNA pseudouridine synthase A-like 
 ghi-r.1   107939533   tRNA pseudouridine synthase A 
 ghi-r.1   121218597   tRNA pseudouridine synthase A 
 bna-r.1   106405824   tRNA pseudouridine synthase 1 
 bna-r.1   106421675   pseudouridylate synthase 1 homolog 
 bna-r.1   106433713   pseudouridylate synthase 1 homolog 
 sbi-r.1   8076052   tRNA pseudouridine synthase A, mitochondrial 
 sot-r.1   102585116   tRNA pseudouridine synthase A, mitochondrial 
 cit-r.1   102626088   uncharacterized LOC102626088 
 bdi-r.1   100834201   tRNA pseudouridine synthase A 
 nta-r.1   107780205   uncharacterized LOC107780205 

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Top 50 coexpressed genes to CHLRE_06g292450v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_06g292450v5 (cre-r.1 coexpression data)

CoexMap"66053815"


creCHLRE_06g292450v5 | Entrez gene ID : 66053815    
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 2 2 1 1 1 1 1 2 2 3 1 2 3 1 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0031119 [list] [network] tRNA pseudouridine synthesis  (8 genes)  IEA  
GO:1990481 [list] [network] mRNA pseudouridine synthesis  (8 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (2907 genes)  IEA  
GO MF
GO:0009982 [list] [network] pseudouridine synthase activity  (23 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (670 genes)  IEA  
Protein XP_042924152.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  cyto 4,  nucl 1  (predict for XP_042924152.1)
Subcellular
localization
TargetP
other 4  (predict for XP_042924152.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_06g292450v5
ath-u.5
for
AT1G20370
ath-u.5
for
AT1G76120
gma-u.5
for
100811976
gma-u.5
for
100778978
sly-u.5
for
101250299
osa-u.5
for
4330262
zma-u.5
for
100283773
bra-r.6
for
103832059
vvi-u.5
for
100267766
ppo-u.5
for
7490609
ppo-u.5
for
7485628
mtr-u.5
for
11442694
mtr-u.5
for
11440088
tae-r.2
for
123145056
tae-r.2
for
123137671
tae-r.2
for
123127959
hvu-r.1
for
123401341
ghi-r.1
for
107939533
ghi-r.1
for
121218597
bna-r.1
for
106405824
bna-r.1
for
106421675
bna-r.1
for
106433713
sbi-r.1
for
8076052
sot-r.1
for
102585116
cit-r.1
for
102626088
bdi-r.1
for
100834201
nta-r.1
for
107780205


Ortholog ID: 7809
Species cre ath ath gma gma sly osa zma bra vvi ppo ppo mtr mtr tae tae tae hvu ghi ghi bna bna bna sbi sot cit bdi nta
Symbol CHLRE_06g292450v5 AT1G20370 AT1G76120 LOC100811976 LOC100778978 LOC101250299 LOC4330262 LOC100283773 LOC103832059 LOC100267766 LOC7490609 LOC7485628 LOC11442694 LOC11440088 LOC123145056 LOC123137671 LOC123127959 LOC123401341 LOC107939533 LOC121218597 LOC106421675 LOC106433713 LOC106438841 LOC8076052 LOC102585116 LOC102626088 LOC100834201 LOC107780205
Function* uncharacterized protein Pseudouridine synthase family protein Pseudouridine synthase family protein tRNA pseudouridine synthase A tRNA pseudouridine synthase A uncharacterized LOC101250299 uncharacterized LOC4330262 Pseudouridine synthase family protein tRNA pseudouridine synthase 1 uncharacterized LOC100267766 uncharacterized LOC7490609 uncharacterized LOC7485628 tRNA pseudouridine synthase A tRNA pseudouridine synthase A tRNA pseudouridine synthase A tRNA pseudouridine synthase A tRNA pseudouridine synthase A tRNA pseudouridine synthase A-like tRNA pseudouridine synthase A tRNA pseudouridine synthase A pseudouridylate synthase 1 homolog pseudouridylate synthase 1 homolog pseudouridylate synthase 1 homolog tRNA pseudouridine synthase A, mitochondrial tRNA pseudouridine synthase A, mitochondrial uncharacterized LOC102626088 tRNA pseudouridine synthase A uncharacterized LOC107780205
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 2
gma03013 Nucleocytoplasmic transport 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 6
zma04075 Plant hormone signal transduction 2
zma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 2
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03013 Nucleocytoplasmic transport 2
sot03008 Ribosome biogenesis in eukaryotes 2
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 11
cit03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 66053815 838625 843944 100811976 100778978 101250299 4330262 100283773 103832059 100267766 7490609 7485628 11442694 11440088 123145056 123137671 123127959 123401341 107939533 121218597 106421675 106433713 106438841 8076052 102585116 102626088 100834201 107780205
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