ATTED-II : GeneCoexpression result

Species	Gene	Description
cre-r.1	CHLRE_07g313302v5	uncharacterized protein
ath-u.5	RPAC43	RNA polymerase I subunit 43
ath-u.5	ATRPAC42	DNA-directed RNA polymerase family protein
gma-u.5	100818494	DNA-directed RNA polymerases I and III subunit RPAC1
gma-u.5	100786622	DNA-directed RNA polymerases I and III subunit RPAC1-like
sly-u.5	101248458	uncharacterized LOC101248458
osa-u.5	4332531	uncharacterized LOC4332531
zma-u.5	100191943	uncharacterized LOC100191943
bra-r.6	103829922	DNA-directed RNA polymerases I and III subunit rpac1
vvi-u.5	100248046	uncharacterized LOC100248046
ppo-u.5	7485118	uncharacterized LOC7485118
mtr-u.5	11444317	DNA-directed RNA polymerases I and III subunit RPAC1
tae-r.2	123053408	DNA-directed RNA polymerases I and III subunit rpac1
tae-r.2	123130481	DNA-directed RNA polymerases I and III subunit rpac1
tae-r.2	123181834	DNA-directed RNA polymerases I and III subunit rpac1
hvu-r.1	123440058	DNA-directed RNA polymerases I and III subunit rpac1
ghi-r.1	107931573	DNA-directed RNA polymerases I and III subunit rpac1
ghi-r.1	107922651	DNA-directed RNA polymerases I and III subunit RPAC1
bna-r.1	125579279	DNA-directed RNA polymerases I and III subunit rpac1-like
bna-r.1	106366576	DNA-directed RNA polymerases I and III subunit RPAC1
bna-r.1	106435010	DNA-directed RNA polymerases I and III subunit rpac1
sbi-r.1	8071624	DNA-directed RNA polymerases I and III subunit rpac1
sot-r.1	102598359	DNA-directed RNA polymerases I and III subunit RPAC1
cit-r.1	102620633	uncharacterized LOC102620633
bdi-r.1	100828268	DNA-directed RNA polymerases I and III subunit rpac1
nta-r.1	107775895	uncharacterized LOC107775895
nta-r.1	107787692	uncharacterized LOC107787692

Annotation

functional annotation

KEGG

GO BP

GO:0006351 [list] [network] DNA-templated transcription

(95 genes)

IEA

GO CC

GO:0005736 [list] [network] RNA polymerase I complex	(12 genes)	IEA
GO:0005666 [list] [network] RNA polymerase III complex	(16 genes)	IEA

GO MF

GO:0046983 [list] [network] protein dimerization activity	(175 genes)	IEA
GO:0003677 [list] [network] DNA binding	(670 genes)	IEA

Protein

XP_042922405.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 7, pero 1, nucl 1, E.R._vacu 1

(predict for XP_042922405.1)

Subcellular
localization
TargetP

other 9

(predict for XP_042922405.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_07g313302v5	ath-u.5 for RPAC43	ath-u.5 for ATRPAC42	gma-u.5 for 100818494	gma-u.5 for 100786622	sly-u.5 for 101248458	osa-u.5 for 4332531	zma-u.5 for 100191943	bra-r.6 for 103829922	vvi-u.5 for 100248046	ppo-u.5 for 7485118	mtr-u.5 for 11444317	tae-r.2 for 123053408	tae-r.2 for 123130481	tae-r.2 for 123181834	hvu-r.1 for 123440058	ghi-r.1 for 107931573	ghi-r.1 for 107922651	bna-r.1 for 125579279	bna-r.1 for 106366576	bna-r.1 for 106435010	sbi-r.1 for 8071624	sot-r.1 for 102598359	cit-r.1 for 102620633	bdi-r.1 for 100828268	nta-r.1 for 107775895	nta-r.1 for 107787692

Ortholog

Ortholog ID: 6738

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

RPAC43

Function^*

uncharacterized protein

RNA polymerase I subunit 43

DNA-directed RNA polymerase family protein

DNA-directed RNA polymerases I and III subunit RPAC1

DNA-directed RNA polymerases I and III subunit RPAC1-like

uncharacterized LOC101248458

uncharacterized LOC4332531

uncharacterized LOC100191943

DNA-directed RNA polymerases I and III subunit rpac1

uncharacterized LOC100248046

uncharacterized LOC7485118

DNA-directed RNA polymerases I and III subunit RPAC1

DNA-directed RNA polymerases I and III subunit rpac1

DNA-directed RNA polymerases I and III subunit RPAC1

DNA-directed RNA polymerases I and III subunit rpac1-like

DNA-directed RNA polymerases I and III subunit RPAC1

DNA-directed RNA polymerases I and III subunit rpac1

DNA-directed RNA polymerases I and III subunit RPAC1

uncharacterized LOC102620633

DNA-directed RNA polymerases I and III subunit rpac1

uncharacterized LOC107775895

uncharacterized LOC107787692

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03008	Ribosome biogenesis in eukaryotes	5
cre03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03020	RNA polymerase	4
ath03018	RNA degradation	2
ath03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	6
ath03020	RNA polymerase	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	8
gma03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	4
bra03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03020	RNA polymerase	2
mtr03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	3
tae03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	8
tae03020	RNA polymerase	3
tae03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	8
tae03020	RNA polymerase	3
tae03060	Protein export	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	5
hvu03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03020	RNA polymerase	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03020	RNA polymerase	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03020	RNA polymerase	3
bna03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	8
bna03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03020	RNA polymerase	4
bna03008	Ribosome biogenesis in eukaryotes	3
bna03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00970	Aminoacyl-tRNA biosynthesis	4
bdi03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	2
nta03020	RNA polymerase	2
nta00040	Pentose and glucuronate interconversions	2
nta00052	Galactose metabolism	2
nta00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	2
nta03020	RNA polymerase	2
nta00040	Pentose and glucuronate interconversions	2
nta00052	Galactose metabolism	2
nta00500	Starch and sucrose metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

66053942

842356

842377

100818494

100786622

101248458

4332531

100191943

103829922

100248046

7485118

11444317

123053408

123130481

123181834

123440058

107920955

107888162

125579279

106366576

106452553

8071624

102598359

102620633

100828268

107775895

107787692

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to CHLRE_07g313302v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_07g313302v5 (cre-r.1 coexpression data)


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta
Paralog	1	2	2	1	1	1	1	1	1	1	3	1	2	3	1	1	1	1	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_07g313302v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_07g313302v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**