ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
cre-r.1	CHLRE_07g355466v5	uncharacterized protein
ath-u.5	DML1	demeter-like 1
ath-u.5	DML2	demeter-like 2
ath-u.5	DML3	demeter-like protein 3
gma-u.5	100787368	protein ROS1A
gma-u.5	100806794	DNA glycosylase/AP lyase ROS1
gma-u.5	100779756	DNA glycosylase/AP lyase ROS1
sly-u.5	DML3	DNA demethylase 3
sly-u.5	DML2	DNA demethylase 2
sly-u.5	DML1	DNA demethylase1
osa-u.5	4338944	protein ROS1C-like
osa-u.5	4338940	protein ROS1
zma-u.5	100382817	uncharacterized LOC100382817
zma-u.5	100280151	uncharacterized LOC100280151
zma-u.5	103630409	Protein ROS1
bra-r.6	103847276	transcriptional activator DEMETER
bra-r.6	103842475	DEMETER-like protein 3
bra-r.6	103867278	DNA glycosylase/AP lyase ROS1
vvi-u.5	100257983	transcriptional activator DEMETER
vvi-u.5	100247223	transcriptional activator DEMETER
ppo-u.5	18096903	DEMETER-like protein 3
ppo-u.5	7491643	transcriptional activator DEMETER
ppo-u.5	7479830	transcriptional activator DEMETER
mtr-u.5	25499391	transcriptional activator DEMETER
mtr-u.5	25483895	DNA glycosylase/AP lyase ROS1
mtr-u.5	25485813	transcriptional activator DEMETER
tae-r.2	123058129	protein ROS1C
tae-r.2	123064105	protein ROS1C
tae-r.2	123059833	transcriptional activator DEMETER
hvu-r.1	123452140	protein ROS1A-like
hvu-r.1	123446041	protein ROS1C-like
hvu-r.1	123442421	protein ROS1A-like
ghi-r.1	107936635	transcriptional activator DEMETER
ghi-r.1	107922077	transcriptional activator DEMETER
ghi-r.1	107921883	transcriptional activator DEMETER
bna-r.1	106362333	DEMETER-like protein 3
bna-r.1	106372500	transcriptional activator DEMETER
bna-r.1	106396066	DNA glycosylase/AP lyase ROS1
sbi-r.1	8074739	protein ROS1
sbi-r.1	8072510	uncharacterized LOC8072510
sbi-r.1	8061201	protein ROS1
sot-r.1	102597023	protein ROS1-like
sot-r.1	102597039	protein ROS1-like
sot-r.1	102605689	protein ROS1
cit-r.1	DEMETER	transcriptional activator DEMETER
cit-r.1	102612881	DNA glycosylase/AP lyase ROS1
cit-r.1	102619180	DNA glycosylase/AP lyase ROS1-like
bdi-r.1	100844361	protein ROS1
bdi-r.1	100823274	uncharacterized LOC100823274
bdi-r.1	100841571	uncharacterized LOC100841571
nta-r.1	107760412	DNA glycosylase/AP lyase ROS1
nta-r.1	107778975	transcriptional activator DEMETER
nta-r.1	107792081	DNA glycosylase/AP lyase ROS1

Top 50 coexpressed genes to CHLRE_07g355466v5 (cre-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to CHLRE_07g355466v5 (cre-r.1 coexpression data)

CoexMap"66054234"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006281 [list] [network] DNA repair

(229 genes)

IEA

GO CC

GO MF

GO:0035514 [list] [network] DNA demethylase activity	(3 genes)	IEA
GO:0019104 [list] [network] DNA N-glycosylase activity	(10 genes)	IEA
GO:0051539 [list] [network] 4 iron, 4 sulfur cluster binding	(26 genes)	IEA

Protein

XP_042923214.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 5, cyto 4, plas 1, pero 1

(predict for XP_042923214.1)

Subcellular
localization
TargetP

other 4

(predict for XP_042923214.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_07g355466v5	ath-u.5 for DML1	ath-u.5 for DML2	ath-u.5 for DML3	gma-u.5 for 100787368	gma-u.5 for 100806794	gma-u.5 for 100779756	sly-u.5 for DML3	sly-u.5 for DML2	sly-u.5 for DML1	osa-u.5 for 4338944	osa-u.5 for 4338940	zma-u.5 for 100382817	zma-u.5 for 100280151	zma-u.5 for 103630409	bra-r.6 for 103847276	bra-r.6 for 103842475	bra-r.6 for 103867278	vvi-u.5 for 100257983	vvi-u.5 for 100247223	ppo-u.5 for 18096903	ppo-u.5 for 7491643	ppo-u.5 for 7479830	mtr-u.5 for 25499391	mtr-u.5 for 25483895	mtr-u.5 for 25485813	tae-r.2 for 123058129	tae-r.2 for 123064105	tae-r.2 for 123059833	hvu-r.1 for 123452140	hvu-r.1 for 123446041	hvu-r.1 for 123442421	ghi-r.1 for 107936635	ghi-r.1 for 107922077	ghi-r.1 for 107921883	bna-r.1 for 106362333	bna-r.1 for 106372500	bna-r.1 for 106396066	sbi-r.1 for 8074739	sbi-r.1 for 8072510	sbi-r.1 for 8061201	sot-r.1 for 102597023	sot-r.1 for 102597039	sot-r.1 for 102605689	cit-r.1 for DEMETER	cit-r.1 for 102612881	cit-r.1 for 102619180	bdi-r.1 for 100844361	bdi-r.1 for 100823274	bdi-r.1 for 100841571	nta-r.1 for 107760412	nta-r.1 for 107778975	nta-r.1 for 107792081

Ortholog

Ortholog ID: 951

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

CHLRE_07g355466v5

DML1

DML3

DME

LOC100806794

LOC100788292

DML2

DML1

DML4

DEMETER

Function^*

uncharacterized protein

demeter-like 1

demeter-like protein 3

HhH-GPD base excision DNA repair family protein

DNA glycosylase/AP lyase ROS1

DNA demethylase 2

DNA demethylase1

DNA demethylase 4

protein ROS1C-like

protein ROS1A-like

uncharacterized LOC100382817

uncharacterized LOC100280151

Protein ROS1

transcriptional activator DEMETER

DEMETER-like protein 3

DNA glycosylase/AP lyase ROS1

transcriptional activator DEMETER

DEMETER-like protein 3

transcriptional activator DEMETER

DNA glycosylase/AP lyase ROS1

protein ROS1C

transcriptional activator DEMETER

protein ROS1C

protein ROS1A-like

protein ROS1C-like

protein ROS1A-like

transcriptional activator DEMETER

uncharacterized LOC107902775

transcriptional activator DEMETER

transcriptional activator DEMETER-like

DNA glycosylase/AP lyase ROS1-like

uncharacterized LOC8072510

protein ROS1

protein ROS1-like

protein ROS1

transcriptional activator DEMETER-like

transcriptional activator DEMETER

DNA glycosylase/AP lyase ROS1

DNA glycosylase/AP lyase ROS1-like

protein ROS1

uncharacterized LOC100841571

protein ROS1

DNA glycosylase/AP lyase ROS1

protein ROS1A-like

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03082	ATP-dependent chromatin remodeling	2
ath04142	Lysosome	2
ath04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03082	ATP-dependent chromatin remodeling	3
gma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04120	Ubiquitin mediated proteolysis	2
osa03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00620	Pyruvate metabolism	3
bra01200	Carbon metabolism	3
bra00010	Glycolysis / Gluconeogenesis	2
bra00020	Citrate cycle (TCA cycle)	2
bra00785	Lipoic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04120	Ubiquitin mediated proteolysis	3
bra03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04142	Lysosome	3
mtr00562	Inositol phosphate metabolism	2
mtr04070	Phosphatidylinositol signaling system	2
mtr04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00052	Galactose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	2
ghi03440	Homologous recombination	2
ghi03450	Non-homologous end-joining	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	2
ghi03440	Homologous recombination	2
ghi03450	Non-homologous end-joining	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03440	Homologous recombination	2
bna03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04120	Ubiquitin mediated proteolysis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03082	ATP-dependent chromatin remodeling	2
bdi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00310	Lysine degradation	2
nta00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03015	mRNA surveillance pathway	2
nta03082	ATP-dependent chromatin remodeling	2
nta03022	Basal transcription factors	2
nta04120	Ubiquitin mediated proteolysis	2
nta03013	Nucleocytoplasmic transport	2

Expression

Expression pattern

Entrez Gene ID^*

66054234

818224

829552

830335

100806794

100788292

101263652

101244311

101251080

4338944

9271145

100382817

100280151

103630409

103847276

103842475

103867278

100257983

100247223

18096903

7491643

7479830

25483895

123064105

123059833

123141492

123452140

123446041

123442421

107918161

107959385

107902775

106372500

106433122

125609294

8072510

8061201

8056049

102597023

102605689

102594068

102630316

102612881

102619180

100844361

100841571

100823585

107760412

107813452

The preparation time of this page was 0.1 [sec].


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta
Paralog	1	3	3	3	2	3	3	2	3	3	3	3	3	3	3	3	3	3	3

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_07g355466v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_07g355466v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**