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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_09g397253v5   uncharacterized protein 
 ath-u.5   AT1G26380   FAD-binding Berberine family protein 
 ath-u.5   AT1G26390   FAD-binding Berberine family protein 
 gma-u.5   100775893   berberine bridge enzyme-like 21 
 sly-u.5   101246398   berberine bridge enzyme-like 22 
 sly-u.5   101264571   berberine bridge enzyme-like 21 
 zma-u.5   100282250   reticuline oxidase 
 bra-r.6   108869423   berberine bridge enzyme-like 4 
 bra-r.6   103865354   berberine bridge enzyme-like 15 
 vvi-u.5   100253961   tetrahydroberberine oxidase 
 ppo-u.5   7480408   berberine bridge enzyme-like 13 
 ppo-u.5   112324786   berberine bridge enzyme-like 8 
 mtr-u.5   11407647   berberine bridge enzyme-like 21 
 tae-r.2   123051687   berberine bridge enzyme-like Cyn d 4 
 tae-r.2   123069860   berberine bridge enzyme-like Cyn d 4 
 tae-r.2   123092748   berberine bridge enzyme-like Cyn d 4 
 hvu-r.1   123413019   berberine bridge enzyme-like Cyn d 4 
 hvu-r.1   123421037   berberine bridge enzyme-like Cyn d 4 
 ghi-r.1   107930198   berberine bridge enzyme-like 18 
 ghi-r.1   107925098   berberine bridge enzyme-like 7 
 ghi-r.1   107925099   berberine bridge enzyme-like 8 
 bna-r.1   106407225   berberine bridge enzyme-like 12 
 bna-r.1   106407151   berberine bridge enzyme-like 13 
 bna-r.1   106402215   berberine bridge enzyme-like 7 
 sbi-r.1   8073826   berberine bridge enzyme-like 13 
 sbi-r.1   8069230   berberine bridge enzyme-like 18 
 sot-r.1   102594245   reticuline oxidase-like protein 
 sot-r.1   102594246   tetrahydrocannabinolic acid synthase-like 
 sot-r.1   102594583   tetrahydrocannabinolic acid synthase-like 
 cit-r.1   102612334   tetrahydroberberine oxidase-like 
 cit-r.1   102613244   tetrahydroberberine oxidase-like 
 cit-r.1   102613827   tetrahydroberberine oxidase-like 
 bdi-r.1   100833798   berberine bridge enzyme-like 28 
 bdi-r.1   100828152   berberine bridge enzyme-like 18 
 nta-r.1   107766440   berberine bridge enzyme-like 21 

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Top 50 coexpressed genes to CHLRE_09g397253v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_09g397253v5 (cre-r.1 coexpression data)

CoexMap"66054712"


creCHLRE_09g397253v5 | Entrez gene ID : 66054712    
Species cre ath gma sly zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta osa
Paralog 1 2 1 2 1 2 1 2 1 3 2 3 3 2 3 3 2 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0071949 [list] [network] FAD binding  (46 genes)  IEA  
Protein XP_042921299.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 3,  nucl 3,  cyto 3,  cyto_nucl 3  (predict for XP_042921299.1)
Subcellular
localization
TargetP
other 7  (predict for XP_042921299.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_09g397253v5
ath-u.5
for
AT1G26380
ath-u.5
for
AT1G26390
gma-u.5
for
100775893
sly-u.5
for
101246398
sly-u.5
for
101264571
zma-u.5
for
100282250
bra-r.6
for
108869423
bra-r.6
for
103865354
vvi-u.5
for
100253961
ppo-u.5
for
7480408
ppo-u.5
for
112324786
mtr-u.5
for
11407647
tae-r.2
for
123051687
tae-r.2
for
123069860
tae-r.2
for
123092748
hvu-r.1
for
123413019
hvu-r.1
for
123421037
ghi-r.1
for
107930198
ghi-r.1
for
107925098
ghi-r.1
for
107925099
bna-r.1
for
106407225
bna-r.1
for
106407151
bna-r.1
for
106402215
sbi-r.1
for
8073826
sbi-r.1
for
8069230
sot-r.1
for
102594245
sot-r.1
for
102594246
sot-r.1
for
102594583
cit-r.1
for
102612334
cit-r.1
for
102613244
cit-r.1
for
102613827
bdi-r.1
for
100833798
bdi-r.1
for
100828152
nta-r.1
for
107766440


Ortholog ID: 8
Species cre ath ath gma gma sly sly sly osa osa zma zma bra bra bra vvi vvi vvi ppo mtr mtr mtr tae hvu hvu hvu ghi ghi ghi bna bna sbi sbi sot sot cit bdi nta nta nta
Symbol CHLRE_09g397253v5 AT1G26380 AT1G26390 LOC100800519 LOC100797188 LOC101263376 LOC101256448 LOC101254965 LOC4341254 LOC4341253 LOC103629842 LOC103629835 LOC103865354 LOC103850258 LOC103867418 LOC100253961 LOC100243731 LOC100264985 LOC18109453 LOC11407647 LOC11422989 LOC112421407 LOC123160322 LOC123413019 LOC123411227 LOC123409696 LOC107914760 LOC107925005 LOC107930381 LOC106375689 LOC125576459 LOC8073826 LOC110430759 LOC102594583 LOC102586155 LOC102623495 LOC100833798 LOC107763225 LOC107807516 LOC107807513
Function* uncharacterized protein FAD-binding Berberine family protein FAD-binding Berberine family protein berberine bridge enzyme-like 13 berberine bridge enzyme-like 21 tetrahydroberberine oxidase-like monolignol oxidoreductase AtBBE-like 13 berberine bridge enzyme-like 28 berberine bridge enzyme-like Cyn d 4 berberine bridge enzyme-like Cyn d 4 berberine bridge enzyme-like 27 berberine bridge enzyme-like 27 berberine bridge enzyme-like 15 berberine bridge enzyme-like 1 berberine bridge enzyme-like 15 tetrahydroberberine oxidase tetrahydroberberine oxidase berberine bridge enzyme-like 21 berberine bridge enzyme-like 13 berberine bridge enzyme-like 21 berberine bridge enzyme-like 22 berberine bridge enzyme-like 21 berberine bridge enzyme-like Cyn d 4 berberine bridge enzyme-like Cyn d 4 berberine bridge enzyme-like Cyn d 4 berberine bridge enzyme-like Cyn d 4 berberine bridge enzyme-like 18 berberine bridge enzyme-like 7 berberine bridge enzyme-like 26 berberine bridge enzyme-like 22 berberine bridge enzyme-like 13 berberine bridge enzyme-like 13 berberine bridge enzyme-like 18 tetrahydrocannabinolic acid synthase-like reticuline oxidase-like protein tetrahydroberberine oxidase-like berberine bridge enzyme-like 28 tetrahydroberberine oxidase berberine bridge enzyme-like 22 berberine bridge enzyme-like 22
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00480 Glutathione metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00940 Phenylpropanoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00010 Glycolysis / Gluconeogenesis 4
osa01200 Carbon metabolism 3
osa01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00940 Phenylpropanoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00902 Monoterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00040 Pentose and glucuronate interconversions 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00940 Phenylpropanoid biosynthesis 2
bra04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04142 Lysosome 4
vvi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00940 Phenylpropanoid biosynthesis 4
ppo04016 MAPK signaling pathway - plant 2
ppo04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00350 Tyrosine metabolism 2
ghi00950 Isoquinoline alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00052 Galactose metabolism 2
ghi00561 Glycerolipid metabolism 2
ghi00600 Sphingolipid metabolism 2
ghi00603 Glycosphingolipid biosynthesis - globo and isoglobo series 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00940 Phenylpropanoid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00010 Glycolysis / Gluconeogenesis 4
sbi00052 Galactose metabolism 4
sbi00260 Glycine, serine and threonine metabolism 2
sbi00310 Lysine degradation 2
sbi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00940 Phenylpropanoid biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 66054712 839180 839181 100800519 100797188 101263376 101256448 101254965 4341254 4341253 103629842 103629835 103865354 103850258 103867418 100253961 100243731 100264985 18109453 11407647 11422989 112421407 123160322 123413019 123411227 123409696 107914760 107925005 107930381 106375689 125576459 8073826 110430759 102594583 102586155 102623495 100833798 107763225 107807516 107807513
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