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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_11g474850v5   uncharacterized protein 
 ath-u.5   AT4G21770   Pseudouridine synthase family protein 
 gma-u.5   100804907   RNA pseudouridine synthase 6, chloroplastic 
 gma-u.5   100791185   RNA pseudouridine synthase 6, chloroplastic 
 sly-u.5   101257827   RNA pseudouridine synthase 6, chloroplastic 
 zma-u.5   103647913   RNA pseudouridine synthase 6, chloroplastic 
 vvi-u.5   100248694   RNA pseudouridine synthase 6, chloroplastic 
 ppo-u.5   7458544   RNA pseudouridine synthase 6, chloroplastic 
 mtr-u.5   25486124   RNA pseudouridine synthase 6, chloroplastic 
 mtr-u.5   11434179   RNA pseudouridine synthase 6, chloroplastic 

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Top 50 coexpressed genes to CHLRE_11g474850v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_11g474850v5 (cre-r.1 coexpression data)

CoexMap"66055307"


creCHLRE_11g474850v5 | Entrez gene ID : 66055307    
Species cre ath gma sly zma vvi ppo mtr sbi nta bra osa hvu cit bdi sot tae bna ghi
Paralog 1 1 2 1 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0001522 [list] [network] pseudouridine synthesis  (29 genes)  IEA  
GO CC
GO MF
GO:0009982 [list] [network] pseudouridine synthase activity  (23 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (670 genes)  IEA  
Protein XP_042919613.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 8,  plas 1,  vacu 1,  pero 1  (predict for XP_042919613.1)
Subcellular
localization
TargetP
other 9  (predict for XP_042919613.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_11g474850v5

.
ath-u.5
for
AT4G21770

.
gma-u.5
for
100804907

.
gma-u.5
for
100791185

.
sly-u.5
for
101257827

.
zma-u.5
for
103647913

.
vvi-u.5
for
100248694

.
ppo-u.5
for
7458544

.
mtr-u.5
for
25486124

.
mtr-u.5
for
11434179

.


Ortholog ID: 9604
Species ath gma gma sly zma bra vvi ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta
Symbol AT4G21770 LOC100804907 LOC100791185 LOC101257827 LOC103647913 LOC103859419 LOC100248694 LOC7458544 LOC25486124 LOC11434179 LOC123043850 LOC123187635 LOC123424880 LOC107905945 LOC107958255 LOC106347899 LOC111202196 CHLRE_11g474850v5 LOC8073142 LOC102589335 LOC102607892 LOC100824239 LOC107813088
Function* Pseudouridine synthase family protein RNA pseudouridine synthase 6, chloroplastic RNA pseudouridine synthase 6, chloroplastic RNA pseudouridine synthase 6, chloroplastic RNA pseudouridine synthase 6, chloroplastic RNA pseudouridine synthase 6, chloroplastic RNA pseudouridine synthase 6, chloroplastic RNA pseudouridine synthase 6, chloroplastic RNA pseudouridine synthase 6, chloroplastic RNA pseudouridine synthase 6, chloroplastic RNA pseudouridine synthase 6, chloroplastic RNA pseudouridine synthase 6, chloroplastic RNA pseudouridine synthase 6, chloroplastic RNA pseudouridine synthase 6, chloroplastic RNA pseudouridine synthase 6, chloroplastic RNA pseudouridine synthase 6, chloroplastic RNA pseudouridine synthase 6, chloroplastic uncharacterized protein RNA pseudouridine synthase 6, chloroplastic RNA pseudouridine synthase 6, chloroplastic RNA pseudouridine synthase 6, chloroplastic RNA pseudouridine synthase 6, chloroplastic RNA pseudouridine synthase 6, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00240 Pyrimidine metabolism 3
mtr01240 Biosynthesis of cofactors 3
mtr00220 Arginine biosynthesis 2
mtr00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01240 Biosynthesis of cofactors 2
mtr00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
tae00970 Aminoacyl-tRNA biosynthesis 3
tae00270 Cysteine and methionine metabolism 3
tae01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 5
bna00290 Valine, leucine and isoleucine biosynthesis 4
bna00770 Pantothenate and CoA biosynthesis 4
bna01210 2-Oxocarboxylic acid metabolism 4
bna01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 5
bna00290 Valine, leucine and isoleucine biosynthesis 4
bna00770 Pantothenate and CoA biosynthesis 4
bna01210 2-Oxocarboxylic acid metabolism 4
bna01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 4
cit03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00860 Porphyrin metabolism 2
nta03010 Ribosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 828265 100804907 100791185 101257827 103647913 103859419 100248694 7458544 25486124 11434179 123043850 123187635 123424880 107905945 107958255 106347899 111202196 66055307 8073142 102589335 102607892 100824239 107813088
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