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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_12g507558v5   uncharacterized protein 
 ath-u.5   AT5G12040   Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein 
 gma-u.5   100817195   omega-amidase, chloroplastic 
 sly-u.5   101257877   omega-amidase, chloroplastic-like 
 sly-u.5   101257275   omega-amidase, chloroplastic-like 
 sly-u.5   101246455   omega-amidase, chloroplastic 
 osa-u.5   4331798   omega-amidase, chloroplastic 
 zma-u.5   100279870   uncharacterized LOC100279870 
 zma-u.5   100280276   uncharacterized LOC100280276 
 vvi-u.5   100266241   omega-amidase, chloroplastic 
 ppo-u.5   7462234   omega-amidase, chloroplastic 
 mtr-u.5   11433493   omega-amidase, chloroplastic 

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Top 50 coexpressed genes to CHLRE_12g507558v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_12g507558v5 (cre-r.1 coexpression data)

CoexMap"66055523"


creCHLRE_12g507558v5 | Entrez gene ID : 66055523    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 1 3 1 2 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre00250 [list] [network] Alanine, aspartate and glutamate metabolism (28 genes)
GO BP
GO:0006528 [list] [network] asparagine metabolic process  (2 genes)  IEA  
GO:0006107 [list] [network] oxaloacetate metabolic process  (4 genes)  IEA  
GO:0006541 [list] [network] glutamine metabolic process  (10 genes)  IEA  
GO CC
GO:0005739 [list] [network] mitochondrion  (441 genes)  IEA  
GO MF
GO:0050152 [list] [network] omega-amidase activity  (2 genes)  IEA  
Protein XP_042918184.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for XP_042918184.1)
Subcellular
localization
TargetP
scret 5,  chlo 4  (predict for XP_042918184.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_12g507558v5

.
ath-u.5
for
AT5G12040

.
gma-u.5
for
100817195

.
sly-u.5
for
101257877

.
sly-u.5
for
101257275

.
sly-u.5
for
101246455

.
osa-u.5
for
4331798

.
zma-u.5
for
100279870

.
zma-u.5
for
100280276

.
vvi-u.5
for
100266241

.
ppo-u.5
for
7462234

.
mtr-u.5
for
11433493

.


Ortholog ID: 3972
Species ath gma sly sly osa zma zma bra bra vvi ppo mtr tae hvu hvu ghi ghi bna bna cre cre sbi sbi sot sot cit bdi bdi nta nta
Symbol AT5G12040 LOC100817195 LOC101257275 LOC101257877 LOC4331798 LOC100279870 LOC100280276 LOC103846671 LOC103855952 LOC100266241 LOC7462234 LOC11433493 LOC123098630 LOC123408680 LOC123412269 LOC107958851 LOC107929959 LOC106430855 LOC106358506 CHLRE_11g467717v5 CHLRE_12g507558v5 LOC8077325 LOC8082030 LOC102599008 LOC102578791 LOC102610878 LOC100833460 LOC100833757 LOC107807526 LOC107771474
Function* Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein omega-amidase, chloroplastic omega-amidase, chloroplastic-like omega-amidase, chloroplastic-like omega-amidase, chloroplastic uncharacterized LOC100279870 uncharacterized LOC100280276 omega-amidase, chloroplastic omega-amidase, chloroplastic omega-amidase, chloroplastic omega-amidase, chloroplastic omega-amidase, chloroplastic omega-amidase, chloroplastic uncharacterized LOC123408680 omega-amidase, chloroplastic-like omega-amidase, chloroplastic omega-amidase, chloroplastic omega-amidase, chloroplastic omega-amidase, chloroplastic uncharacterized protein uncharacterized protein omega-amidase, chloroplastic omega-amidase, chloroplastic omega-amidase, chloroplastic-like omega-amidase, chloroplastic-like omega-amidase, chloroplastic omega-amidase, chloroplastic omega-amidase, chloroplastic omega-amidase, chloroplastic-like omega-amidase, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00400 Phenylalanine, tyrosine and tryptophan biosynthesis 7
ath01230 Biosynthesis of amino acids 7
ath01200 Carbon metabolism 3
ath01210 2-Oxocarboxylic acid metabolism 3
ath00250 Alanine, aspartate and glutamate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 2
gma00300 Lysine biosynthesis 2
gma00470 D-Amino acid metabolism 2
gma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00480 Glutathione metabolism 3
osa01240 Biosynthesis of cofactors 3
osa00630 Glyoxylate and dicarboxylate metabolism 3
osa00710 Carbon fixation by Calvin cycle 3
osa01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01200 Carbon metabolism 6
bra00710 Carbon fixation by Calvin cycle 5
bra01230 Biosynthesis of amino acids 4
bra00010 Glycolysis / Gluconeogenesis 3
bra00020 Citrate cycle (TCA cycle) 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01200 Carbon metabolism 3
ppo01230 Biosynthesis of amino acids 2
ppo00250 Alanine, aspartate and glutamate metabolism 2
ppo00270 Cysteine and methionine metabolism 2
ppo00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00190 Oxidative phosphorylation 8
mtr00020 Citrate cycle (TCA cycle) 3
mtr01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 7
tae00270 Cysteine and methionine metabolism 6
tae00250 Alanine, aspartate and glutamate metabolism 3
tae00340 Histidine metabolism 3
tae00790 Folate biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04120 Ubiquitin mediated proteolysis 2
hvu00600 Sphingolipid metabolism 2
hvu04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00250 Alanine, aspartate and glutamate metabolism 4
ghi00940 Phenylpropanoid biosynthesis 2
ghi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00250 Alanine, aspartate and glutamate metabolism 6
ghi00940 Phenylpropanoid biosynthesis 2
ghi00650 Butanoate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04146 Peroxisome 4
bna00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04146 Peroxisome 5
bna01200 Carbon metabolism 3
bna01230 Biosynthesis of amino acids 3
bna00020 Citrate cycle (TCA cycle) 2
bna00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00510 N-Glycan biosynthesis 8
cre04141 Protein processing in endoplasmic reticulum 8
cre00513 Various types of N-glycan biosynthesis 7
cre00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00510 N-Glycan biosynthesis 7
cre04141 Protein processing in endoplasmic reticulum 7
cre00513 Various types of N-glycan biosynthesis 6
cre00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00190 Oxidative phosphorylation 3
sbi00270 Cysteine and methionine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01230 Biosynthesis of amino acids 4
bdi00270 Cysteine and methionine metabolism 3
bdi01240 Biosynthesis of cofactors 3
bdi01200 Carbon metabolism 3
bdi00340 Histidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00250 Alanine, aspartate and glutamate metabolism 2
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01230 Biosynthesis of amino acids 7
nta00300 Lysine biosynthesis 5
nta00470 D-Amino acid metabolism 5
nta00270 Cysteine and methionine metabolism 2
nta00920 Sulfur metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 831077 100817195 101257275 101257877 4331798 100279870 100280276 103846671 103855952 100266241 7462234 11433493 123098630 123408680 123412269 107958851 107929959 106430855 106358506 5716504 66055523 8077325 8082030 102599008 102578791 102610878 100833460 100833757 107807526 107771474
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