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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_12g520850v5   uncharacterized protein 
 ath-u.5   MED31   SOH1 family protein 
 gma-u.5   100818057   mediator of RNA polymerase II transcription subunit 31 
 gma-u.5   100527879   SOH1 domain-containing protein 
 sly-u.5   101246697   mediator of RNA polymerase II transcription subunit 31 
 osa-u.5   4342476   mediator of RNA polymerase II transcription subunit 31 
 osa-u.5   4349407   mediator of RNA polymerase II transcription subunit 31 
 zma-u.5   100193504   Mediator of RNA polymerase II transcription subunit 31 
 vvi-u.5   100247653   mediator of RNA polymerase II transcription subunit 31 
 ppo-u.5   18103846   mediator of RNA polymerase II transcription subunit 31 
 ppo-u.5   7456679   mediator of RNA polymerase II transcription subunit 31 
 mtr-u.5   25485114   mediator of RNA polymerase II transcription subunit 31 

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Top 50 coexpressed genes to CHLRE_12g520850v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_12g520850v5 (cre-r.1 coexpression data)

CoexMap"66055588"


creCHLRE_12g520850v5 | Entrez gene ID : 66055588    
Species cre ath gma sly osa zma vvi ppo mtr hvu sot tae nta bra cit ghi bna bdi sbi
Paralog 1 1 2 1 2 1 1 2 1 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (190 genes)  IEA  
GO CC
GO:0070847 [list] [network] core mediator complex  (4 genes)  IEA  
GO:0016592 [list] [network] mediator complex  (16 genes)  IEA  
GO MF
GO:0003712 [list] [network] transcription coregulator activity  (73 genes)  IEA  
Protein XP_042918471.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 6,  nucl 2,  chlo 1,  cyto 1,  plas 1,  cyto_plas 1  (predict for XP_042918471.1)
Subcellular
localization
TargetP
other 7  (predict for XP_042918471.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_12g520850v5

.
ath-u.5
for
MED31

.
gma-u.5
for
100818057

.
gma-u.5
for
100527879

.
sly-u.5
for
101246697

.
osa-u.5
for
4342476

.
osa-u.5
for
4349407

.
zma-u.5
for
100193504

.
vvi-u.5
for
100247653

.
ppo-u.5
for
18103846

.
ppo-u.5
for
7456679

.
mtr-u.5
for
25485114

.


Ortholog ID: 7341
Species ath gma gma sly osa osa zma bra vvi ppo ppo mtr tae tae hvu ghi ghi bna cre sbi sbi sot cit bdi nta nta
Symbol MED31 LOC100527879 LOC100818057 LOC101246697 LOC4342476 LOC4349407 LOC100193504 LOC103845710 LOC100247653 LOC18103846 LOC7456679 LOC25485114 LOC123181656 LOC123135909 LOC123439173 LOC107937987 LOC107953608 LOC106439473 CHLRE_12g520850v5 LOC8055630 LOC8056933 LOC102597993 LOC102609887 LOC100837580 LOC107819721 LOC107782139
Function* SOH1 family protein SOH1 domain-containing protein mediator of RNA polymerase II transcription subunit 31 mediator of RNA polymerase II transcription subunit 31 mediator of RNA polymerase II transcription subunit 31 mediator of RNA polymerase II transcription subunit 31 Mediator of RNA polymerase II transcription subunit 31 mediator of RNA polymerase II transcription subunit 31 mediator of RNA polymerase II transcription subunit 31 mediator of RNA polymerase II transcription subunit 31 mediator of RNA polymerase II transcription subunit 31 mediator of RNA polymerase II transcription subunit 31 mediator of RNA polymerase II transcription subunit 31 mediator of RNA polymerase II transcription subunit 31 mediator of RNA polymerase II transcription subunit 31 mediator of RNA polymerase II transcription subunit 31 mediator of RNA polymerase II transcription subunit 31 mediator of RNA polymerase II transcription subunit 31 uncharacterized protein mediator of RNA polymerase II transcription subunit 31 mediator of RNA polymerase II transcription subunit 31 mediator of RNA polymerase II transcription subunit 31 mediator of RNA polymerase II transcription subunit 31 mediator of RNA polymerase II transcription subunit 31 mediator of RNA polymerase II transcription subunit 31 mediator of RNA polymerase II transcription subunit 31
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
gma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03020 RNA polymerase 3
osa03420 Nucleotide excision repair 3
osa04141 Protein processing in endoplasmic reticulum 2
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
osa03020 RNA polymerase 2
osa03420 Nucleotide excision repair 2
osa03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00220 Arginine biosynthesis 2
ppo00250 Alanine, aspartate and glutamate metabolism 2
ppo00910 Nitrogen metabolism 2
ppo01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04144 Endocytosis 3
tae04120 Ubiquitin mediated proteolysis 3
tae04130 SNARE interactions in vesicular transport 3
tae04145 Phagosome 3
tae03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 5
tae04130 SNARE interactions in vesicular transport 3
tae04145 Phagosome 3
tae04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03020 RNA polymerase 2
hvu03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 3
ghi03018 RNA degradation 3
ghi03083 Polycomb repressive complex 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03083 Polycomb repressive complex 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03018 RNA degradation 3
cit01200 Carbon metabolism 3
cit03050 Proteasome 3
cit00190 Oxidative phosphorylation 3
cit00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 3
bdi04120 Ubiquitin mediated proteolysis 2
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03420 Nucleotide excision repair 2
nta04141 Protein processing in endoplasmic reticulum 2
nta00073 Cutin, suberine and wax biosynthesis 2
nta00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03420 Nucleotide excision repair 2
nta04141 Protein processing in endoplasmic reticulum 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 832113 100527879 100818057 101246697 4342476 4349407 100193504 103845710 100247653 18103846 7456679 25485114 123181656 123135909 123439173 107937987 107953608 106439473 66055588 8055630 8056933 102597993 102609887 100837580 107819721 107782139
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