ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-u.5	AT2G34200	RING/FYVE/PHD zinc finger superfamily protein
ath-u.5	AT2G37950	RING/FYVE/PHD zinc finger superfamily protein
ath-u.5	AT5G05830	RING/FYVE/PHD zinc finger superfamily protein
gma-u.5	100812277	uncharacterized LOC100812277
gma-u.5	100808666	C4HC3 zinc-finger like motif-containing protein
sly-u.5	101262037	uncharacterized LOC101262037
sly-u.5	101261417	uncharacterized LOC101261417
osa-u.5	4324432	uncharacterized LOC4324432
osa-u.5	4338967	uncharacterized LOC4338967
osa-u.5	4338078	uncharacterized LOC4338078
zma-u.5	100193426	uncharacterized LOC100193426
zma-u.5	100193545	uncharacterized LOC100193545
zma-u.5	100282950	uncharacterized LOC100282950
vvi-u.5	100254917	uncharacterized LOC100254917
vvi-u.5	100252869	uncharacterized LOC100252869
ppo-u.5	7481507	uncharacterized LOC7481507
ppo-u.5	7485676	uncharacterized LOC7485676
ppo-u.5	7487996	uncharacterized LOC7487996
mtr-u.5	11417976	uncharacterized LOC11417976
mtr-u.5	11413730	uncharacterized LOC11413730
mtr-u.5	11415862	uncharacterized LOC11415862
tae-r.2	123182214	uncharacterized LOC123182214
tae-r.2	123058550	uncharacterized LOC123058550
hvu-r.1	123440206	uncharacterized LOC123440206
hvu-r.1	123444888	uncharacterized LOC123444888
hvu-r.1	123445726	uncharacterized LOC123445726
ghi-r.1	107899011	uncharacterized LOC107899011
ghi-r.1	107904135	uncharacterized LOC107904135
ghi-r.1	107890993	uncharacterized LOC107890993
sbi-r.1	8060098	uncharacterized LOC8060098
sbi-r.1	8072528	uncharacterized LOC8072528
sot-r.1	102600622	uncharacterized LOC102600622
cit-r.1	102626997	uncharacterized LOC102626997
cit-r.1	102626292	uncharacterized LOC102626292
bdi-r.1	100837984	uncharacterized LOC100837984
bdi-r.1	100832543	uncharacterized LOC100832543
bdi-r.1	100824685	uncharacterized LOC100824685
nta-r.1	107760864	uncharacterized LOC107760864
nta-r.1	107765764	uncharacterized LOC107765764

Top 50 coexpressed genes to AT2G34200 (ath-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT2G34200 (ath-u.5 coexpression data)

CoexMap"66055637"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0008270 [list] [network] zinc ion binding

(213 genes)

IEA

Protein

XP_042918598.1 [sequence] [blastp]
XP_042918599.1 [sequence] [blastp]

Subcellular
localization
wolf

plas 6, E.R. 3, nucl_plas 3, golg_plas 3, cysk_plas 3, mito_plas 3, cyto_plas 3	(predict for XP_042918598.1)
plas 4, chlo 2, E.R. 2, nucl_plas 2, cysk_plas 2, mito_plas 2, cyto_plas 2	(predict for XP_042918599.1)

Subcellular
localization
TargetP

other 5, chlo 3	(predict for XP_042918598.1)
mito 3	(predict for XP_042918599.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for AT2G34200	ath-u.5 for AT2G37950	ath-u.5 for AT5G05830	gma-u.5 for 100812277	gma-u.5 for 100808666	sly-u.5 for 101262037	sly-u.5 for 101261417	osa-u.5 for 4324432	osa-u.5 for 4338967	osa-u.5 for 4338078	zma-u.5 for 100193426	zma-u.5 for 100193545	zma-u.5 for 100282950	vvi-u.5 for 100254917	vvi-u.5 for 100252869	ppo-u.5 for 7481507	ppo-u.5 for 7485676	ppo-u.5 for 7487996	mtr-u.5 for 11417976	mtr-u.5 for 11413730	mtr-u.5 for 11415862	tae-r.2 for 123182214	tae-r.2 for 123058550	hvu-r.1 for 123440206	hvu-r.1 for 123444888	hvu-r.1 for 123445726	ghi-r.1 for 107899011	ghi-r.1 for 107904135	ghi-r.1 for 107890993	sbi-r.1 for 8060098	sbi-r.1 for 8072528	sot-r.1 for 102600622	cit-r.1 for 102626997	cit-r.1 for 102626292	bdi-r.1 for 100837984	bdi-r.1 for 100832543	bdi-r.1 for 100824685	nta-r.1 for 107760864	nta-r.1 for 107765764

Ortholog

Ortholog ID: 455

Species

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

Function^*

RING/FYVE/PHD zinc finger superfamily protein

uncharacterized LOC100813336

uncharacterized LOC100816407

uncharacterized LOC100818979

uncharacterized LOC101249331

uncharacterized LOC101263618

uncharacterized LOC4324432

uncharacterized LOC4338967

uncharacterized LOC4338078

uncharacterized LOC100193426

uncharacterized LOC100193545

uncharacterized LOC100282950

uncharacterized LOC103856652

uncharacterized LOC103846923

uncharacterized LOC100252869

uncharacterized LOC100250194

uncharacterized LOC7481507

uncharacterized LOC7490354

uncharacterized LOC7470201

uncharacterized LOC11417976

uncharacterized LOC11415862

uncharacterized LOC25498649

uncharacterized LOC123062605

uncharacterized LOC123440206

uncharacterized LOC123444888

uncharacterized LOC107909652

uncharacterized LOC107929620

uncharacterized LOC107948846

uncharacterized LOC106420248

uncharacterized LOC8060098

uncharacterized LOC8072528

uncharacterized LOC102591798

uncharacterized LOC102591310

uncharacterized LOC102624073

uncharacterized LOC102612080

uncharacterized LOC100837984

uncharacterized LOC100832543

uncharacterized LOC100824685

uncharacterized LOC107765764

uncharacterized LOC107773956

uncharacterized LOC107786795

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00670	One carbon pool by folate	3
gma01200	Carbon metabolism	3
gma01230	Biosynthesis of amino acids	3
gma00270	Cysteine and methionine metabolism	2
gma00450	Selenocompound metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00940	Phenylpropanoid biosynthesis	3
gma03015	mRNA surveillance pathway	2
gma04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00940	Phenylpropanoid biosynthesis	8
gma00380	Tryptophan metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00902	Monoterpenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00500	Starch and sucrose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00541	Biosynthesis of various nucleotide sugars	2
bra01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00040	Pentose and glucuronate interconversions	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04145	Phagosome	3
vvi04517	IgSF CAM signaling	3
vvi04814	Motor proteins	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00380	Tryptophan metabolism	3
ghi00940	Phenylpropanoid biosynthesis	3
ghi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03008	Ribosome biogenesis in eukaryotes	2
sbi04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot01212	Fatty acid metabolism	3
sot00062	Fatty acid elongation	2
sot01040	Biosynthesis of unsaturated fatty acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00460	Cyanoamino acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00941	Flavonoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00592	alpha-Linolenic acid metabolism	2
bdi04016	MAPK signaling pathway - plant	2
bdi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	4
nta00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00230	Purine metabolism	2
nta00240	Pyrimidine metabolism	2
nta01232	Nucleotide metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

817981

830468

100813336

100816407

100818979

101249331

101263618

4324432

4338967

4338078

100193426

100193545

100282950

103856652

103846923

100252869

100250194

7481507

7490354

7470201

11417976

11415862

25498649

123062605

123440206

123444888

107909652

107929620

107948846

106420248

8060098

8072528

102591798

102591310

102624073

102612080

100837984

100832543

100824685

107765764

107773956

107786795

The preparation time of this page was 0.2 [sec].


Species	ath	gma	sly	osa	zma	vvi	ppo	mtr	tae	hvu	ghi	sbi	sot	cit	bdi	nta	bna	cre	bra
Paralog	3	2	2	3	3	2	3	3	2	3	3	2	1	2	3	2	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT2G34200 (ath-u.5 coexpression data)

Top 50 enrichment test to AT2G34200 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**