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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_12g530700v5   uncharacterized protein 
 ath-u.5   TAF12   TBP-associated factor 12 
 gma-u.5   100787779   transcription initiation factor TFIID subunit 12 
 gma-u.5   100781682   transcription initiation factor TFIID subunit 12 
 sly-u.5   101257205   transcription initiation factor TFIID subunit 12 
 osa-u.5   4325055   transcription initiation factor TFIID subunit 12 
 zma-u.5   103650984   transcription initiation factor TFIID subunit 12 
 vvi-u.5   100242486   transcription initiation factor TFIID subunit 12 
 ppo-u.5   7454916   transcription initiation factor TFIID subunit 12 
 mtr-u.5   25483846   transcription initiation factor TFIID subunit 12 

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Top 50 coexpressed genes to CHLRE_12g530700v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_12g530700v5 (cre-r.1 coexpression data)

CoexMap"66055648"


creCHLRE_12g530700v5 | Entrez gene ID : 66055648    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03022 [list] [network] Basal transcription factors (19 genes)
GO BP
GO:0051123 [list] [network] RNA polymerase II preinitiation complex assembly  (9 genes)  IEA  
GO:0006352 [list] [network] DNA-templated transcription initiation  (39 genes)  IEA  
GO CC
GO:0046695 [list] [network] SLIK (SAGA-like) complex  (2 genes)  IEA  
GO:0000124 [list] [network] SAGA complex  (12 genes)  IEA  
GO:0005669 [list] [network] transcription factor TFIID complex  (14 genes)  IEA  
GO MF
GO:0017025 [list] [network] TBP-class protein binding  (8 genes)  IEA  
GO:0046982 [list] [network] protein heterodimerization activity  (139 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (670 genes)  IEA  
Protein XP_042918654.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  cyto 2  (predict for XP_042918654.1)
Subcellular
localization
TargetP
chlo 5,  other 5  (predict for XP_042918654.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_12g530700v5

.
ath-u.5
for
TAF12

.
gma-u.5
for
100787779

.
gma-u.5
for
100781682

.
sly-u.5
for
101257205

.
osa-u.5
for
4325055

.
zma-u.5
for
103650984

.
vvi-u.5
for
100242486

.
ppo-u.5
for
7454916

.
mtr-u.5
for
25483846

.


Ortholog ID: 9466
Species ath gma gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi bdi nta nta
Symbol TAF12 LOC100787779 LOC100781682 LOC101257205 LOC4325055 LOC103650984 LOC103870492 LOC100242486 LOC7454916 LOC25483846 LOC123062663 LOC123079820 LOC123444843 LOC107892301 LOC107949460 LOC106410271 LOC125587921 CHLRE_12g530700v5 LOC8058943 LOC102578266 LOC102608341 LOC100838369 LOC100821745 LOC107760421 LOC107829325
Function* TBP-associated factor 12 transcription initiation factor TFIID subunit 12 transcription initiation factor TFIID subunit 12 transcription initiation factor TFIID subunit 12 transcription initiation factor TFIID subunit 12 transcription initiation factor TFIID subunit 12 transcription initiation factor TFIID subunit 12 transcription initiation factor TFIID subunit 12 transcription initiation factor TFIID subunit 12 transcription initiation factor TFIID subunit 12 transcription initiation factor TFIID subunit 12 transcription initiation factor TFIID subunit 12 transcription initiation factor TFIID subunit 12 transcription initiation factor TFIID subunit 12 transcription initiation factor TFIID subunit 12 transcription initiation factor TFIID subunit 12 transcription initiation factor TFIID subunit 12-like uncharacterized protein transcription initiation factor TFIID subunit 12 transcription initiation factor TFIID subunit 12 transcription initiation factor TFIID subunit 12-like transcription initiation factor TFIID subunit 12 transcription initiation factor TFIID subunit 12 transcription initiation factor TFIID subunit 12 transcription initiation factor TFIID subunit 12
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 3
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 4
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03013 Nucleocytoplasmic transport 5
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 5
osa03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03082 ATP-dependent chromatin remodeling 2
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
tae03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 6
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03022 Basal transcription factors 2
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 4
bna03008 Ribosome biogenesis in eukaryotes 4
bna03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 4
bna03008 Ribosome biogenesis in eukaryotes 4
bna03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03015 mRNA surveillance pathway 3
sbi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
cit03015 mRNA surveillance pathway 2
cit03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 4
bdi03013 Nucleocytoplasmic transport 2
bdi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 2
bdi03015 mRNA surveillance pathway 2
bdi03040 Spliceosome 2
bdi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03022 Basal transcription factors 2
nta03020 RNA polymerase 2
nta03420 Nucleotide excision repair 2
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 2
nta03040 Spliceosome 2
nta03083 Polycomb repressive complex 2
nta03022 Basal transcription factors 2
nta03410 Base excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820168 100787779 100781682 101257205 4325055 103650984 103870492 100242486 7454916 25483846 123062663 123079820 123444843 107892301 107949460 106410271 125587921 66055648 8058943 102578266 102608341 100838369 100821745 107760421 107829325
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