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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_12g532650v5   uncharacterized protein 
 ath-u.5   AT5G51340   Tetratricopeptide repeat (TPR)-like superfamily protein 
 gma-u.5   100780498   sister chromatid cohesion protein SCC4 
 gma-u.5   100777199   sister chromatid cohesion protein SCC4 
 sly-u.5   101249677   sister chromatid cohesion protein SCC4 
 osa-u.5   4335536   sister chromatid cohesion protein SCC4 
 zma-u.5   100192084   uncharacterized LOC100192084 
 vvi-u.5   100253529   sister chromatid cohesion protein SCC4 
 ppo-u.5   7494645   sister chromatid cohesion protein SCC4 
 mtr-u.5   11430059   sister chromatid cohesion protein SCC4 
 mtr-u.5   25496479   sister chromatid cohesion protein SCC4 

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Top 50 coexpressed genes to CHLRE_12g532650v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_12g532650v5 (cre-r.1 coexpression data)

CoexMap"66055654"


creCHLRE_12g532650v5 | Entrez gene ID : 66055654    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 1 1 1 1 1 2 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0034088 [list] [network] maintenance of mitotic sister chromatid cohesion  (2 genes)  IEA  
GO:0007064 [list] [network] mitotic sister chromatid cohesion  (15 genes)  IEA  
GO CC
GO:0032116 [list] [network] SMC loading complex  (3 genes)  IEA  
GO:0000785 [list] [network] chromatin  (219 genes)  IEA  
GO MF
GO:0003690 [list] [network] double-stranded DNA binding  (175 genes)  IEA  
Protein XP_042918686.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl 4,  cyto 1,  plas 1,  vacu 1,  cyto_pero 1,  cyto_E.R. 1  (predict for XP_042918686.1)
Subcellular
localization
TargetP
other 5,  scret 5  (predict for XP_042918686.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_12g532650v5

.
ath-u.5
for
AT5G51340

.
gma-u.5
for
100780498

.
gma-u.5
for
100777199

.
sly-u.5
for
101249677

.
osa-u.5
for
4335536

.
zma-u.5
for
100192084

.
vvi-u.5
for
100253529

.
ppo-u.5
for
7494645

.
mtr-u.5
for
11430059

.
mtr-u.5
for
25496479

.


Ortholog ID: 9731
Species ath gma gma sly osa zma bra vvi ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT5G51340 LOC100780498 LOC100777199 LOC101249677 LOC4335536 LOC100192084 LOC103844391 LOC100253529 LOC7494645 LOC25496479 LOC11430059 LOC123053066 LOC123045231 LOC123426456 LOC107927106 LOC107963815 LOC125593473 LOC106406098 CHLRE_12g532650v5 LOC8069436 LOC102584451 LOC102626523 LOC100845559 LOC107781999 LOC107768693
Function* Tetratricopeptide repeat (TPR)-like superfamily protein sister chromatid cohesion protein SCC4 sister chromatid cohesion protein SCC4 sister chromatid cohesion protein SCC4 sister chromatid cohesion protein SCC4 uncharacterized LOC100192084 sister chromatid cohesion protein SCC4 sister chromatid cohesion protein SCC4 sister chromatid cohesion protein SCC4 sister chromatid cohesion protein SCC4 sister chromatid cohesion protein SCC4 sister chromatid cohesion protein SCC4 sister chromatid cohesion protein SCC4 sister chromatid cohesion protein SCC4 sister chromatid cohesion protein SCC4 sister chromatid cohesion protein SCC4 sister chromatid cohesion protein SCC4 sister chromatid cohesion protein SCC4 uncharacterized protein uncharacterized LOC8069436 uncharacterized LOC102584451 sister chromatid cohesion protein SCC4 sister chromatid cohesion protein SCC4 sister chromatid cohesion protein SCC4-like sister chromatid cohesion protein SCC4
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
osa03015 mRNA surveillance pathway 2
osa03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 3
zma03083 Polycomb repressive complex 2
zma03040 Spliceosome 2
zma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 3
ppo03040 Spliceosome 3
ppo03420 Nucleotide excision repair 2
ppo03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04144 Endocytosis 4
bna03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 4
bna03040 Spliceosome 3
bna04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03410 Base excision repair 3
cre03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 4
bdi03015 mRNA surveillance pathway 2
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 2
nta03460 Fanconi anemia pathway 2
nta03450 Non-homologous end-joining 2
nta03082 ATP-dependent chromatin remodeling 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 835208 100780498 100777199 101249677 4335536 100192084 103844391 100253529 7494645 25496479 11430059 123053066 123045231 123426456 107927106 107963815 125593473 106406098 66055654 8069436 102584451 102626523 100845559 107781999 107768693
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