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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_50g761447v5   uncharacterized protein 
 ath-u.5   AT3G13180   NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein 
 gma-u.5   100779327   probable ribosomal RNA small subunit methyltransferase B 
 sly-u.5   101247890   uncharacterized LOC101247890 
 osa-u.5   4347368   uncharacterized LOC4347368 
 zma-u.5   100280262   uncharacterized LOC100280262 
 vvi-u.5   100253242   uncharacterized LOC100253242 
 ppo-u.5   7485114   uncharacterized LOC7485114 
 mtr-u.5   11426017   probable ribosomal RNA small subunit methyltransferase B 

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Top 50 coexpressed genes to CHLRE_50g761447v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_50g761447v5 (cre-r.1 coexpression data)

CoexMap"66057397"


creCHLRE_50g761447v5 | Entrez gene ID : 66057397    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0001510 [list] [network] RNA methylation  (59 genes)  IEA  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (405 genes)  IEA  
GO CC
GO MF
GO:0008168 [list] [network] methyltransferase activity  (194 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (670 genes)  IEA  
Protein XP_042914006.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  cyto 4  (predict for XP_042914006.1)
Subcellular
localization
TargetP
other 8,  mito 5  (predict for XP_042914006.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_50g761447v5

.
ath-u.5
for
AT3G13180

.
gma-u.5
for
100779327

.
sly-u.5
for
101247890

.
osa-u.5
for
4347368

.
zma-u.5
for
100280262

.
vvi-u.5
for
100253242

.
ppo-u.5
for
7485114

.
mtr-u.5
for
11426017

.


Ortholog ID: 10763
Species ath gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT3G13180 LOC100779327 LOC101247890 LOC4347368 LOC100280262 LOC103849752 LOC100253242 LOC7485114 LOC11426017 LOC123104082 LOC123112306 LOC123399157 LOC107952987 LOC107920991 LOC106377518 LOC111199218 CHLRE_50g761447v5 LOC8083285 LOC102595970 LOC102629461 LOC100845015 LOC107766162 LOC107820730
Function* NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein probable ribosomal RNA small subunit methyltransferase B uncharacterized LOC101247890 uncharacterized LOC4347368 uncharacterized LOC100280262 probable ribosomal RNA small subunit methyltransferase B uncharacterized LOC100253242 uncharacterized LOC7485114 probable ribosomal RNA small subunit methyltransferase B probable ribosomal RNA small subunit methyltransferase B probable ribosomal RNA small subunit methyltransferase B probable ribosomal RNA small subunit methyltransferase B probable ribosomal RNA small subunit methyltransferase B probable ribosomal RNA small subunit methyltransferase B probable ribosomal RNA small subunit methyltransferase B probable ribosomal RNA small subunit methyltransferase B uncharacterized protein probable ribosomal RNA small subunit methyltransferase B ribosomal RNA small subunit methyltransferase B uncharacterized LOC102629461 probable ribosomal RNA small subunit methyltransferase B uncharacterized LOC107766162 uncharacterized LOC107820730
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03060 Protein export 2
gma00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
tae01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01240 Biosynthesis of cofactors 3
hvu00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03450 Non-homologous end-joining 2
ghi00562 Inositol phosphate metabolism 2
ghi04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00562 Inositol phosphate metabolism 2
ghi04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 2
cit00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 5
nta03015 mRNA surveillance pathway 2
nta00450 Selenocompound metabolism 2
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 4
nta03015 mRNA surveillance pathway 2
nta03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820508 100779327 101247890 4347368 100280262 103849752 100253242 7485114 11426017 123104082 123112306 123399157 107952987 107920991 106377518 111199218 66057397 8083285 102595970 102629461 100845015 107766162 107820730
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