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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   MSH1   DNA mismatch repair protein 
 gma-r.7   MSH1   DNA mismatch repair protein 
 gma-m.5   MSH1   DNA mismatch repair protein 
 gma-u.5   100798513   DNA mismatch repair protein MSH1, mitochondrial 
 mtr-u.5   11419868   DNA mismatch repair protein MSH1, mitochondrial 
 ppo-u.5   7459994   DNA mismatch repair protein MSH1, mitochondrial 
 ath-u.5   MSH1   MUTL protein homolog 1 
 vvi-u.5   100266612   DNA mismatch repair protein MSH1, mitochondrial 
 sly-u.5   MSH1   DNA mismatch repair protein MSH1 
 osa-u.5   4336345   DNA mismatch repair protein MSH1, mitochondrial 
 zma-u.5   732814   DNA mismatch repair protein 

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Top 50 coexpressed genes to MSH1 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to MSH1 (gma-u.5 coexpression data)

CoexMap"732638"


gmaMSH1 | Entrez gene ID : 732638      
Species gma mtr ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 4 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006298 [list] [network] mismatch repair  (26 genes)  IEA  
GO CC
GO MF
GO:0030983 [list] [network] mismatched DNA binding  (22 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (3753 genes)  IEA  
Protein NP_001238217.1 [sequence] [blastp]
XP_025979760.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  chlo_mito 5,  mito 2,  cyto_mito 1  (predict for NP_001238217.1)
cyto 4,  chlo 2,  plas 2,  nucl 1,  cysk_plas 1  (predict for XP_025979760.1)
Subcellular
localization
TargetP
mito 6  (predict for NP_001238217.1)
other 5  (predict for XP_025979760.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
MSH1

.
gma-r.7
for
MSH1

.
gma-m.5
for
MSH1

.
gma-u.5
for
100798513

.
mtr-u.5
for
11419868

.
ppo-u.5
for
7459994

.
ath-u.5
for
MSH1

.
vvi-u.5
for
100266612

.
sly-u.5
for
MSH1

.
osa-u.5
for
4336345

.
zma-u.5
for
732814

.


Ortholog ID: 9506
Species ath gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol MSH1 LOC100798513 MSH1 LOC4336345 LOC732814 LOC103828643 LOC100266612 LOC7459994 LOC11419868 LOC123053851 LOC123045973 LOC123427195 LOC107929169 LOC107943117 LOC106450570 LOC106410986 CHLRE_06g250850v5 LOC8060224 LOC102580676 LOC102611883 MSH1 LOC107796307 LOC107768689
Function* MUTL protein homolog 1 DNA mismatch repair protein MSH1, mitochondrial DNA mismatch repair protein MSH1 DNA mismatch repair protein MSH1, mitochondrial DNA mismatch repair protein DNA mismatch repair protein MSH1, mitochondrial DNA mismatch repair protein MSH1, mitochondrial DNA mismatch repair protein MSH1, mitochondrial DNA mismatch repair protein MSH1, mitochondrial DNA mismatch repair protein MSH1, mitochondrial DNA mismatch repair protein MSH1, mitochondrial DNA mismatch repair protein MSH1, mitochondrial DNA mismatch repair protein MSH1, mitochondrial-like DNA mismatch repair protein MSH1, mitochondrial DNA mismatch repair protein MSH1, mitochondrial DNA mismatch repair protein MSH1, mitochondrial uncharacterized protein DNA mismatch repair protein MSH1, mitochondrial DNA mismatch repair protein MSH1, mitochondrial DNA mismatch repair protein MSH1, mitochondrial DNA mismatch repair protein MSH1, mitochondrial DNA mismatch repair protein MSH1, mitochondrial-like DNA mismatch repair protein MSH1, mitochondrial
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 8
ath03430 Mismatch repair 6
ath03410 Base excision repair 4
ath03420 Nucleotide excision repair 3
ath03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00230 Purine metabolism 2
osa03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 4
zma03410 Base excision repair 2
zma03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03440 Homologous recombination 2
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 2
mtr03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 7
tae03440 Homologous recombination 4
tae03450 Non-homologous end-joining 3
tae04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03410 Base excision repair 4
ghi03030 DNA replication 3
ghi03420 Nucleotide excision repair 3
ghi03430 Mismatch repair 3
ghi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03410 Base excision repair 4
ghi03030 DNA replication 3
ghi03420 Nucleotide excision repair 3
ghi03430 Mismatch repair 3
ghi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00561 Glycerolipid metabolism 5
bna00564 Glycerophospholipid metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00510 N-Glycan biosynthesis 3
cre00513 Various types of N-glycan biosynthesis 3
cre04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
sot03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 822021 100798513 778305 4336345 732814 103828643 100266612 7459994 11419868 123053851 123045973 123427195 107929169 107943117 106450570 106410986 5722205 8060224 102580676 102611883 100835189 107796307 107768689
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