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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5   732775   beta-carotene hydroxylase 
 zma-r.6   732775   beta-carotene hydroxylase 
 zma-u.5   103631225   beta-carotene 3-hydroxylase, chloroplastic 
 zma-u.5   732825   beta-carotene hydroxylase 
 osa-u.5   4349224   beta-carotene hydroxylase 2, chloroplastic 
 osa-u.5   4331460   beta-carotene hydroxylase 2, chloroplastic 
 ath-u.5   BETA-OHASE 1   beta-hydroxylase 1 
 ath-u.5   BETA-OHASE 2   beta-carotene hydroxylase 2 
 gma-u.5   BCH3   beta-carotene hydroxylase BCH3 
 gma-u.5   BCH2   beta-carotene hydroxylase BCH2 
 gma-u.5   BCH4   beta-carotene hydroxylase 4 
 sly-u.5   CrtR-b1   beta-carotene hydroxylase 
 sly-u.5   CrtR-b2   beta-carotene hydroxylase 
 vvi-u.5   BCH1   beta-carotene hydroxylase 
 vvi-u.5   100268009   beta-carotene hydroxylase 2, chloroplastic 
 ppo-u.5   18106473   beta-carotene hydroxylase 2, chloroplastic 
 ppo-u.5   7468341   beta-carotene hydroxylase 2, chloroplastic 
 mtr-u.5   25496443   beta-carotene hydroxylase 2, chloroplastic 
 mtr-u.5   11424160   beta-carotene hydroxylase 2, chloroplastic 

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Top 50 coexpressed genes to 732775 (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 732775 (zma-u.5 coexpression data)

CoexMap"732775"


zmaLOC732775 | Entrez gene ID : 732775      
Species zma osa ath gma sly vvi ppo mtr sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 4 2 2 3 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG zma00906 [list] [network] Carotenoid biosynthesis (50 genes)
GO BP
GO:0016123 [list] [network] xanthophyll biosynthetic process  (7 genes)  IEA  
GO:0016119 [list] [network] carotene metabolic process  (24 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (803 genes)  IEA  
GO MF
GO:0010291 [list] [network] beta-carotene 3-hydroxylase activity  (6 genes)  IEA  
GO:0005506 [list] [network] iron ion binding  (373 genes)  IEA  
Protein NP_001105865.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  mito 2  (predict for NP_001105865.2)
Subcellular
localization
TargetP
chlo 6  (predict for NP_001105865.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-u.5
for
732775

.
zma-r.6
for
732775

.
zma-u.5
for
103631225

.
zma-u.5
for
732825

.
osa-u.5
for
4349224

.
osa-u.5
for
4331460

.
ath-u.5
for
BETA-OHASE 1

.
ath-u.5
for
BETA-OHASE 2

.
gma-u.5
for
BCH3

.
gma-u.5
for
BCH2

.
gma-u.5
for
BCH4

.
sly-u.5
for
CrtR-b1

.
sly-u.5
for
CrtR-b2

.
vvi-u.5
for
BCH1

.
vvi-u.5
for
100268009

.
ppo-u.5
for
18106473

.
ppo-u.5
for
7468341

.
mtr-u.5
for
25496443

.
mtr-u.5
for
11424160

.


Ortholog ID: 2749
Species ath ath gma gma sly sly osa zma zma bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot sot cit bdi bdi nta nta
Symbol BETA-OHASE 1 BETA-OHASE 2 BCH5 BCH2 CrtR-b2 CrtR-b1 LOC4349224 LOC732775 LOC103631225 BCH BCH1 LOC100268009 LOC7468341 LOC18106473 LOC25496443 LOC11424160 LOC123054106 LOC123046235 LOC123430624 LOC123449828 LOC121211198 LOC107890752 LOC106406976 LOC106442837 CHLRE_04g215050v5 LOC8060428 LOC8085716 LOC102580250 LOC102582135 LOC102578021 LOC100837035 LOC100836591 LOC107789701 LOC107824034
Function* beta-hydroxylase 1 beta-carotene hydroxylase 2 beta-carotene hydroxylase 5 beta-carotene hydroxylase BCH2 beta-carotene hydroxylase beta-carotene hydroxylase beta-carotene hydroxylase 2, chloroplastic beta-carotene hydroxylase beta-carotene 3-hydroxylase, chloroplastic beta-carotene 3-hydroxylase 1, chloroplastic beta-carotene hydroxylase beta-carotene hydroxylase 2, chloroplastic beta-carotene hydroxylase 2, chloroplastic beta-carotene hydroxylase 2, chloroplastic beta-carotene hydroxylase 2, chloroplastic beta-carotene hydroxylase 2, chloroplastic beta-carotene 3-hydroxylase, chloroplastic beta-carotene 3-hydroxylase, chloroplastic beta-carotene 3-hydroxylase, chloroplastic-like beta-carotene 3-hydroxylase, chloroplastic-like beta-carotene 3-hydroxylase, chloroplastic beta-carotene hydroxylase 2, chloroplastic beta-carotene 3-hydroxylase 1, chloroplastic beta-carotene 3-hydroxylase 1, chloroplastic-like uncharacterized protein beta-carotene hydroxylase 2, chloroplastic beta-carotene 3-hydroxylase, chloroplastic beta-carotene hydroxylase 1, chloroplastic-like beta-carotene hydroxylase 2, chloroplastic beta-carotene hydroxylase beta-carotene 3-hydroxylase, chloroplastic beta-carotene 3-hydroxylase, chloroplastic beta-carotene hydroxylase 2, chloroplastic beta-carotene hydroxylase 2, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00900 Terpenoid backbone biosynthesis 2
ath04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00350 Tyrosine metabolism 3
ath00270 Cysteine and methionine metabolism 2
ath00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ath00360 Phenylalanine metabolism 2
ath01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00906 Carotenoid biosynthesis 2
gma00750 Vitamin B6 metabolism 2
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00906 Carotenoid biosynthesis 4
gma00900 Terpenoid backbone biosynthesis 4
gma00860 Porphyrin metabolism 3
gma00730 Thiamine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00906 Carotenoid biosynthesis 3
sly04075 Plant hormone signal transduction 2
sly04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00860 Porphyrin metabolism 4
osa00196 Photosynthesis - antenna proteins 4
osa00906 Carotenoid biosynthesis 2
osa00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00906 Carotenoid biosynthesis 4
zma01240 Biosynthesis of cofactors 4
zma00051 Fructose and mannose metabolism 3
zma00520 Amino sugar and nucleotide sugar metabolism 3
zma01250 Biosynthesis of nucleotide sugars 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 7
zma04016 MAPK signaling pathway - plant 6
zma00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00906 Carotenoid biosynthesis 4
vvi00052 Galactose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 5
ppo04016 MAPK signaling pathway - plant 4
ppo00906 Carotenoid biosynthesis 3
ppo00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00130 Ubiquinone and other terpenoid-quinone biosynthesis 4
tae00350 Tyrosine metabolism 4
tae00360 Phenylalanine metabolism 4
tae00310 Lysine degradation 3
tae01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00130 Ubiquinone and other terpenoid-quinone biosynthesis 4
tae00350 Tyrosine metabolism 4
tae00360 Phenylalanine metabolism 4
tae01240 Biosynthesis of cofactors 3
tae00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi02010 ABC transporters 3
ghi04981 Folate transport and metabolism 3
ghi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04016 MAPK signaling pathway - plant 4
ghi04075 Plant hormone signal transduction 4
ghi00051 Fructose and mannose metabolism 2
ghi00500 Starch and sucrose metabolism 2
ghi00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00906 Carotenoid biosynthesis 4
bna04712 Circadian rhythm - plant 3
bna00740 Riboflavin metabolism 2
bna01240 Biosynthesis of cofactors 2
bna00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00906 Carotenoid biosynthesis 4
bna04712 Circadian rhythm - plant 3
bna00740 Riboflavin metabolism 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04016 MAPK signaling pathway - plant 3
sbi04075 Plant hormone signal transduction 3
sbi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04016 MAPK signaling pathway - plant 2
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00710 Carbon fixation by Calvin cycle 3
bdi01200 Carbon metabolism 3
bdi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 11
nta04016 MAPK signaling pathway - plant 9
nta00906 Carotenoid biosynthesis 2
nta02010 ABC transporters 2
nta04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 9
nta04016 MAPK signaling pathway - plant 7
nta00906 Carotenoid biosynthesis 2
nta02010 ABC transporters 2
nta04981 Folate transport and metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 828675 835334 100813368 100785541 544297 544133 4349224 732775 103631225 103861586 100232875 100268009 7468341 18106473 25496443 11424160 123054106 123046235 123430624 123449828 121211198 107890752 106406976 106442837 5724272 8060428 8085716 102580250 102582135 102578021 100837035 100836591 107789701 107824034
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