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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5   732816   phosphomethylpyrimidine kinase/thiamin-phosphate pyrophosphorylase 
 zma-r.6   732816   phosphomethylpyrimidine kinase/thiamin-phosphate pyrophosphorylase 
 osa-u.5   4351707   probable thiamine biosynthetic bifunctional enzyme, chloroplastic 
 ath-u.5   TH1   thiamine biosynthesis protein 
 gma-u.5   100817332   thiamine biosynthetic bifunctional enzyme TH1, chloroplastic 
 gma-u.5   100811722   thiamine biosynthetic bifunctional enzyme TH1, chloroplastic 
 sly-u.5   101249213   thiamine biosynthetic bifunctional enzyme TH1, chloroplastic 
 vvi-u.5   100249214   thiamine biosynthetic bifunctional enzyme TH1, chloroplastic 
 mtr-u.5   11424195   thiamine biosynthetic bifunctional enzyme TH1, chloroplastic 

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Top 50 coexpressed genes to 732816 (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 732816 (zma-u.5 coexpression data)

CoexMap"732816"


zmaLOC732816 | Entrez gene ID : 732816      
Species zma osa ath gma sly vvi mtr sbi nta bra cre hvu cit bdi ppo sot tae bna ghi
Paralog 2 1 1 2 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG zma00730 [list] [network] Thiamine metabolism (30 genes)
zma01240 [list] [network] Biosynthesis of cofactors (295 genes)
GO BP
GO:0009228 [list] [network] thiamine biosynthetic process  (6 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (803 genes)  IEA  
GO MF
GO:0004789 [list] [network] thiamine-phosphate diphosphorylase activity  (2 genes)  IEA  
GO:0008902 [list] [network] hydroxymethylpyrimidine kinase activity  (2 genes)  IEA  
GO:0008972 [list] [network] phosphomethylpyrimidine kinase activity  (2 genes)  IEA  
Protein NP_001105900.2 [sequence] [blastp]
XP_020405665.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 10  (predict for NP_001105900.2)
chlo 10  (predict for XP_020405665.1)
Subcellular
localization
TargetP
chlo 8  (predict for NP_001105900.2)
chlo 8  (predict for XP_020405665.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-u.5
for
732816

.
zma-r.6
for
732816

.
osa-u.5
for
4351707

.
ath-u.5
for
TH1

.
gma-u.5
for
100817332

.
gma-u.5
for
100811722

.
sly-u.5
for
101249213

.
vvi-u.5
for
100249214

.
mtr-u.5
for
11424195

.


Ortholog ID: 10471
Species ath gma gma sly osa zma bra vvi mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol TH1 LOC100817332 LOC100811722 LOC101249213 LOC4351707 LOC732816 LOC103840813 LOC100249214 LOC11424195 LOC123136540 LOC123132472 LOC123403434 LOC107920644 LOC107894239 LOC106347538 LOC106401390 CHLRE_08g365600v5 LOC8084752 LOC102601050 LOC102610242 LOC100833618 LOC107817826 LOC107767671
Function* thiamine biosynthesis protein thiamine biosynthetic bifunctional enzyme TH1, chloroplastic thiamine biosynthetic bifunctional enzyme TH1, chloroplastic thiamine biosynthetic bifunctional enzyme TH1, chloroplastic probable thiamine biosynthetic bifunctional enzyme, chloroplastic phosphomethylpyrimidine kinase/thiamin-phosphate pyrophosphorylase thiamine biosynthetic bifunctional enzyme BTH1, chloroplastic thiamine biosynthetic bifunctional enzyme TH1, chloroplastic thiamine biosynthetic bifunctional enzyme TH1, chloroplastic probable thiamine biosynthetic bifunctional enzyme, chloroplastic probable thiamine biosynthetic bifunctional enzyme, chloroplastic probable thiamine biosynthetic bifunctional enzyme, chloroplastic thiamine biosynthetic bifunctional enzyme TH1, chloroplastic thiamine biosynthetic bifunctional enzyme TH1, chloroplastic thiamine biosynthetic bifunctional enzyme BTH1, chloroplastic thiamine biosynthetic bifunctional enzyme BTH1, chloroplastic-like uncharacterized protein probable thiamine biosynthetic bifunctional enzyme, chloroplastic thiamine biosynthetic bifunctional enzyme TH1, chloroplastic thiamine biosynthetic bifunctional enzyme TH1, chloroplastic probable thiamine biosynthetic bifunctional enzyme, chloroplastic thiamine biosynthetic bifunctional enzyme TH1, chloroplastic thiamine biosynthetic bifunctional enzyme TH1, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00450 Selenocompound metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00860 Porphyrin metabolism 4
gma01240 Biosynthesis of cofactors 4
gma00970 Aminoacyl-tRNA biosynthesis 2
gma00290 Valine, leucine and isoleucine biosynthesis 2
gma01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 3
gma01240 Biosynthesis of cofactors 2
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01230 Biosynthesis of amino acids 6
osa00470 D-Amino acid metabolism 3
osa00970 Aminoacyl-tRNA biosynthesis 3
osa01210 2-Oxocarboxylic acid metabolism 3
osa00300 Lysine biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00270 Cysteine and methionine metabolism 3
zma00260 Glycine, serine and threonine metabolism 2
zma00261 Monobactam biosynthesis 2
zma00300 Lysine biosynthesis 2
zma01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01240 Biosynthesis of cofactors 3
bra03018 RNA degradation 3
bra00860 Porphyrin metabolism 2
bra00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04626 Plant-pathogen interaction 2
vvi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00410 beta-Alanine metabolism 3
mtr00240 Pyrimidine metabolism 2
mtr00770 Pantothenate and CoA biosynthesis 2
mtr00220 Arginine biosynthesis 2
mtr01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00460 Cyanoamino acid metabolism 3
tae00730 Thiamine metabolism 2
tae01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00280 Valine, leucine and isoleucine degradation 4
hvu01210 2-Oxocarboxylic acid metabolism 4
hvu00640 Propanoate metabolism 3
hvu00785 Lipoic acid metabolism 3
hvu03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00730 Thiamine metabolism 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00730 Thiamine metabolism 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 2
bna00730 Thiamine metabolism 2
bna01240 Biosynthesis of cofactors 2
bna03082 ATP-dependent chromatin remodeling 2
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 2
bna00730 Thiamine metabolism 2
bna01240 Biosynthesis of cofactors 2
bna03015 mRNA surveillance pathway 2
bna04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03022 Basal transcription factors 2
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01230 Biosynthesis of amino acids 4
sot01240 Biosynthesis of cofactors 3
sot00190 Oxidative phosphorylation 2
sot00290 Valine, leucine and isoleucine biosynthesis 2
sot01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 3
cit03040 Spliceosome 2
cit04144 Endocytosis 2
cit03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 5
bdi03050 Proteasome 2
bdi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 4
nta03015 mRNA surveillance pathway 4
nta00920 Sulfur metabolism 2
nta00730 Thiamine metabolism 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 4
nta03015 mRNA surveillance pathway 4
nta00920 Sulfur metabolism 2
nta00730 Thiamine metabolism 2
nta01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 838901 100817332 100811722 101249213 4351707 732816 103840813 100249214 11424195 123136540 123132472 123403434 107920644 107894239 106347538 106401390 66054353 8084752 102601050 102610242 100833618 107817826 107767671
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