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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7454990   pentatricopeptide repeat-containing protein At1g79080, chloroplastic 
 ppo-r.4   7454990   pentatricopeptide repeat-containing protein At1g79080, chloroplastic 
 ppo-m.4   7454990   pentatricopeptide repeat-containing protein At1g79080, chloroplastic 
 ppo-u.5   7480369   pentatricopeptide repeat-containing protein At1g79080, chloroplastic 
 gma-u.5   102667121   pentatricopeptide repeat-containing protein At1g79080, chloroplastic 
 gma-u.5   100807983   pentatricopeptide repeat-containing protein At1g79080, chloroplastic 
 mtr-u.5   25487021   pentatricopeptide repeat-containing protein At1g79080, chloroplastic 
 ath-u.5   AT1G79080   Pentatricopeptide repeat (PPR) superfamily protein 
 vvi-u.5   100247376   pentatricopeptide repeat-containing protein At1g79080, chloroplastic-like 
 vvi-u.5   104877963   pentatricopeptide repeat-containing protein At3g53700, chloroplastic-like 
 sly-u.5   101259766   pentatricopeptide repeat-containing protein At1g79080, chloroplastic 

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Top 50 coexpressed genes to 7454990 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7454990 (ppo-u.5 coexpression data)

CoexMap"7454990"


ppoLOC7454990 | Entrez gene ID : 7454990    
Species ppo gma mtr ath vvi sly sbi nta bra osa cre cit hvu bdi sot zma tae bna ghi
Paralog 4 2 1 1 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (4916 genes)  IEA  
Protein XP_002317023.4 [sequence] [blastp]
Subcellular
localization
wolf
chlo 10  (predict for XP_002317023.4)
Subcellular
localization
TargetP
chlo 8  (predict for XP_002317023.4)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7454990

.
ppo-r.4
for
7454990

.
ppo-m.4
for
7454990

.
ppo-u.5
for
7480369

.
gma-u.5
for
102667121

.
gma-u.5
for
100807983

.
mtr-u.5
for
25487021

.
ath-u.5
for
AT1G79080

.
vvi-u.5
for
100247376

.
vvi-u.5
for
104877963

.
sly-u.5
for
101259766

.


Ortholog ID: 12272
Species ath gma gma sly bra vvi vvi ppo ppo mtr ghi ghi bna bna sot nta nta
Symbol AT1G79080 LOC100807983 LOC102667121 LOC101259766 LOC103832386 LOC100247376 LOC104877963 LOC7454990 LOC7480369 LOC25487021 LOC107903832 LOC107948485 LOC125594923 LOC106354765 LOC102583838 LOC107806282 LOC107762517
Function* Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat-containing protein At1g79080, chloroplastic pentatricopeptide repeat-containing protein At1g79080, chloroplastic pentatricopeptide repeat-containing protein At1g79080, chloroplastic pentatricopeptide repeat-containing protein At1g79080, chloroplastic pentatricopeptide repeat-containing protein At1g79080, chloroplastic-like pentatricopeptide repeat-containing protein At3g53700, chloroplastic-like pentatricopeptide repeat-containing protein At1g79080, chloroplastic pentatricopeptide repeat-containing protein At1g79080, chloroplastic pentatricopeptide repeat-containing protein At1g79080, chloroplastic pentatricopeptide repeat-containing protein At1g79080, chloroplastic pentatricopeptide repeat-containing protein At1g79080, chloroplastic pentatricopeptide repeat-containing protein At1g79080, chloroplastic-like pentatricopeptide repeat-containing protein At1g79080, chloroplastic pentatricopeptide repeat-containing protein At1g79080, chloroplastic uncharacterized LOC107806282 uncharacterized LOC107762517
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00240 Pyrimidine metabolism 2
bra01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 5
sot00710 Carbon fixation by Calvin cycle 4
sot01200 Carbon metabolism 4
sot01230 Biosynthesis of amino acids 4
sot00030 Pentose phosphate pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 844249 100807983 102667121 101259766 103832386 100247376 104877963 7454990 7480369 25487021 107903832 107948485 125594923 106354765 102583838 107806282 107762517
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