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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-m.4   7455877   uncharacterized LOC7455877 
 ppo-u.5   18101206   uncharacterized LOC18101206 
 gma-u.5   100776511   probable vacuolar amino acid transporter YPQ1 
 gma-u.5   100787660   lysosomal amino acid transporter 1 
 gma-u.5   100789634   PQ-loop repeat-containing protein 
 mtr-u.5   11405854   seven transmembrane protein 1 
 ath-u.5   AT2G41050   PQ-loop repeat family protein / transmembrane family protein 
 ath-u.5   AT4G36850   PQ-loop repeat family protein / transmembrane family protein 
 vvi-u.5   100240998   probable vacuolar amino acid transporter YPQ1 
 vvi-u.5   100853498   uncharacterized LOC100853498 
 sly-u.5   101258619   vacuolar lysine transporter YPQ1 
 osa-u.5   4324377   vacuolar lysine transporter YPQ1 
 zma-u.5   100273653   PQ loop repeat family protein 
 zma-u.5   100304285   PQ-loop repeat family protein / transmembrane family protein 

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Top 50 coexpressed genes to 7455877 (ppo-m.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7455877 (ppo-m.4 coexpression data)

CoexMap"7455877"


ppoLOC7455877 | Entrez gene ID : 7455877    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 2 3 1 2 2 1 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop04148 [list] [network] Efferocytosis (75 genes)
GO BP
GO CC
GO MF
Protein XP_024443375.2 [sequence] [blastp]
XP_024443376.2 [sequence] [blastp]
Subcellular
localization
wolf
plas 4,  E.R. 2,  golg_plas 2,  cysk_plas 2,  cyto_plas 2  (predict for XP_024443375.2)
plas 4,  E.R. 2,  golg_plas 2,  cysk_plas 2,  cyto_plas 2  (predict for XP_024443376.2)
Subcellular
localization
TargetP
mito 5,  other 4  (predict for XP_024443375.2)
mito 5,  other 4  (predict for XP_024443376.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-m.4
for
7455877

.
ppo-u.5
for
18101206

.
gma-u.5
for
100776511

.
gma-u.5
for
100787660

.
gma-u.5
for
100789634

.
mtr-u.5
for
11405854

.
ath-u.5
for
AT2G41050

.
ath-u.5
for
AT4G36850

.
vvi-u.5
for
100240998

.
vvi-u.5
for
100853498

.
sly-u.5
for
101258619

.
osa-u.5
for
4324377

.
zma-u.5
for
100273653

.
zma-u.5
for
100304285

.


Ortholog ID: 3919
Species ath gma gma sly osa zma zma bra bra vvi vvi mtr mtr tae tae hvu ghi ghi bna bna cre sbi sot cit cit bdi nta nta
Symbol AT2G41050 LOC100776511 LOC100789634 LOC101258619 LOC4324377 LOC100304285 LOC100273653 LOC103865430 LOC103866528 LOC100240998 LOC100853498 LOC11405854 LOC11422546 LOC123061056 LOC123069643 LOC123443476 LOC107926537 LOC121209681 LOC125608219 LOC106429842 CHLRE_06g278191v5 LOC8074511 LOC102581565 LOC102608727 LOC102626245 LOC100836633 LOC107826224 LOC107823421
Function* PQ-loop repeat family protein / transmembrane family protein probable vacuolar amino acid transporter YPQ1 PQ-loop repeat-containing protein vacuolar lysine transporter YPQ1 vacuolar lysine transporter YPQ1 PQ-loop repeat family protein / transmembrane family protein PQ loop repeat family protein probable vacuolar amino acid transporter YPQ3 uncharacterized LOC103866528 probable vacuolar amino acid transporter YPQ1 uncharacterized LOC100853498 seven transmembrane protein 1 lysosomal amino acid transporter 1 homolog lysosomal amino acid transporter 1 homolog lysosomal amino acid transporter 1 homolog lysosomal amino acid transporter 1 homolog probable vacuolar amino acid transporter YPQ3 seven transmembrane protein 1 probable vacuolar amino acid transporter YPQ3 probable vacuolar amino acid transporter YPQ3 uncharacterized protein uncharacterized LOC8074511 probable vacuolar amino acid transporter YPQ2 uncharacterized LOC102608727 probable vacuolar amino acid transporter YPQ1 uncharacterized LOC100836633 vacuolar histidine transporter YPQ3 vacuolar histidine transporter YPQ3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04142 Lysosome 2
gma00250 Alanine, aspartate and glutamate metabolism 2
gma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04148 Efferocytosis 2
gma00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
gma00350 Tyrosine metabolism 2
gma00360 Phenylalanine metabolism 2
gma00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01240 Biosynthesis of cofactors 2
osa01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01230 Biosynthesis of amino acids 5
zma00020 Citrate cycle (TCA cycle) 3
zma01200 Carbon metabolism 3
zma01210 2-Oxocarboxylic acid metabolism 3
zma04082 Neuroactive ligand signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04148 Efferocytosis 2
zma00250 Alanine, aspartate and glutamate metabolism 2
zma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00260 Glycine, serine and threonine metabolism 2
bra00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00190 Oxidative phosphorylation 2
bra04712 Circadian rhythm - plant 2
bra00760 Nicotinate and nicotinamide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00906 Carotenoid biosynthesis 3
vvi00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00280 Valine, leucine and isoleucine degradation 2
mtr01230 Biosynthesis of amino acids 2
mtr01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00280 Valine, leucine and isoleucine degradation 5
mtr00310 Lysine degradation 2
mtr00260 Glycine, serine and threonine metabolism 2
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04148 Efferocytosis 3
tae00330 Arginine and proline metabolism 3
tae01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04148 Efferocytosis 3
tae00330 Arginine and proline metabolism 3
tae01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01240 Biosynthesis of cofactors 3
hvu00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 3
ghi04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04146 Peroxisome 2
ghi00290 Valine, leucine and isoleucine biosynthesis 2
ghi00660 C5-Branched dibasic acid metabolism 2
ghi00966 Glucosinolate biosynthesis 2
ghi01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 2
bna04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 2
bna04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01200 Carbon metabolism 4
cit01240 Biosynthesis of cofactors 3
cit00030 Pentose phosphate pathway 2
cit00020 Citrate cycle (TCA cycle) 2
cit01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04148 Efferocytosis 2
nta00270 Cysteine and methionine metabolism 2
nta00543 Exopolysaccharide biosynthesis 2
nta00920 Sulfur metabolism 2
nta01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04145 Phagosome 2
nta04517 IgSF CAM signaling 2
nta04814 Motor proteins 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 818704 100776511 100789634 101258619 4324377 100304285 100273653 103865430 103866528 100240998 100853498 11405854 11422546 123061056 123069643 123443476 107926537 121209681 125608219 106429842 66053703 8074511 102581565 102608727 102626245 100836633 107826224 107823421
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