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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-m.4   7456306   protein TRANSPARENT TESTA 16 
 mtr-u.5   11433884   protein TRANSPARENT TESTA 16 
 osa-u.5   4336981   MADS-box transcription factor 31-like 

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Top 50 coexpressed genes to 7456306 (ppo-m.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7456306 (ppo-m.4 coexpression data)

CoexMap"7456306"


ppoLOC7456306 | Entrez gene ID : 7456306    
Species ppo mtr osa tae zma bdi vvi sbi bna sly nta cre sot hvu ath ghi gma cit bra
Paralog 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II  (159 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (3662 genes)  IEA  
GO MF
GO:0000978 [list] [network] RNA polymerase II cis-regulatory region sequence-specific DNA binding  (266 genes)  IEA  
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific  (338 genes)  IEA  
GO:0046983 [list] [network] protein dimerization activity  (520 genes)  IEA  
Protein XP_002310645.4 [sequence] [blastp]
XP_024461249.2 [sequence] [blastp]
XP_024461250.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  mito 1  (predict for XP_002310645.4)
nucl 8,  mito 1  (predict for XP_024461249.2)
nucl 8,  mito 1  (predict for XP_024461250.2)
Subcellular
localization
TargetP
other 6,  mito 5  (predict for XP_002310645.4)
other 6,  mito 5  (predict for XP_024461249.2)
other 6,  mito 5  (predict for XP_024461250.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-m.4
for
7456306

.
mtr-u.5
for
11433884

.
osa-u.5
for
4336981

.


Ortholog ID: 3264
Species osa bra mtr ghi ghi bna bna cit bdi
Symbol LOC4336981 LOC103854906 LOC11433884 LOC107894052 LOC107918783 LOC106380103 LOC106366053 LOC102614986 LOC100822441
Function* MADS-box transcription factor 31-like protein TRANSPARENT TESTA 16-like protein TRANSPARENT TESTA 16 protein TRANSPARENT TESTA 16-like protein TRANSPARENT TESTA 16-like protein TRANSPARENT TESTA 16 protein TRANSPARENT TESTA 16 MADS-box protein defh21-like MADS-box transcription factor 29-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00053 Ascorbate and aldarate metabolism 2
osa00480 Glutathione metabolism 2
osa00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 4336981 103854906 11433884 107894052 107918783 106380103 106366053 102614986 100822441
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