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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7459070   uncharacterized LOC7459070 
 ppo-r.4   7459070   uncharacterized LOC7459070 
 ppo-m.4   7459070   uncharacterized LOC7459070 
 gma-u.5   100815444   uncharacterized LOC100815444 
 gma-u.5   100808422   TIMELESS-interacting protein 
 gma-u.5   100799216   Swi3 and Zn finger domain-containing protein 
 mtr-u.5   112421389   TIMELESS-interacting protein 
 ath-u.5   AT3G02820   zinc knuckle (CCHC-type) family protein 
 vvi-u.5   100240999   uncharacterized LOC100240999 
 sly-u.5   101252679   chromosome segregation in meiosis protein 3 
 osa-u.5   4330814   putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 
 zma-u.5   100192665   nucleic acid binding protein 

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Top 50 coexpressed genes to 7459070 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7459070 (ppo-u.5 coexpression data)

CoexMap"7459070"


ppoLOC7459070 | Entrez gene ID : 7459070    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 3 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0043111 [list] [network] replication fork arrest  (2 genes)  IEA  
GO:0031297 [list] [network] replication fork processing  (11 genes)  IEA  
GO:0000076 [list] [network] DNA replication checkpoint signaling  (15 genes)  IEA  
GO:0006974 [list] [network] DNA damage response  (323 genes)  IEA  
GO CC
GO:0031298 [list] [network] replication fork protection complex  (3 genes)  IEA  
GO:0005634 [list] [network] nucleus  (3662 genes)  IEA  
GO MF
GO:0008270 [list] [network] zinc ion binding  (777 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (2205 genes)  IEA  
Protein XP_002315820.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  plas 1,  cysk 1,  cysk_plas 1  (predict for XP_002315820.2)
Subcellular
localization
TargetP
chlo 8  (predict for XP_002315820.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7459070

.
ppo-r.4
for
7459070

.
ppo-m.4
for
7459070

.
gma-u.5
for
100815444

.
gma-u.5
for
100808422

.
gma-u.5
for
100799216

.
mtr-u.5
for
112421389

.
ath-u.5
for
AT3G02820

.
vvi-u.5
for
100240999

.
sly-u.5
for
101252679

.
osa-u.5
for
4330814

.
zma-u.5
for
100192665

.


Ortholog ID: 8463
Species ath gma gma sly osa zma bra vvi ppo mtr tae tae hvu hvu ghi ghi bna bna cre sbi sot bdi bdi nta nta
Symbol AT3G02820 LOC100815444 LOC100808422 LOC101252679 LOC4330814 LOC100192665 LOC103870890 LOC100240999 LOC7459070 LOC112421389 LOC123093282 LOC123098549 LOC123397519 LOC123449537 LOC107886349 LOC107909976 LOC125587556 LOC106453211 CHLRE_12g512500v5 LOC8069239 LOC102588496 LOC100834083 LOC100821358 LOC107780880 LOC107821293
Function* zinc knuckle (CCHC-type) family protein uncharacterized LOC100815444 TIMELESS-interacting protein chromosome segregation in meiosis protein 3 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 nucleic acid binding protein TIMELESS-interacting protein uncharacterized LOC100240999 uncharacterized LOC7459070 TIMELESS-interacting protein uncharacterized LOC123093282 uncharacterized LOC123098549 nascent polypeptide-associated complex subunit alpha, muscle-specific form-like uncharacterized LOC123449537 TIMELESS-interacting protein TIMELESS-interacting protein TIMELESS-interacting protein-like TIMELESS-interacting protein uncharacterized protein TIMELESS-interacting protein TIMELESS-interacting protein uncharacterized LOC100834083 uncharacterized LOC100821358 uncharacterized LOC107780880 uncharacterized LOC107821293
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 6
ath03430 Mismatch repair 2
ath03440 Homologous recombination 2
ath03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 8
gma03420 Nucleotide excision repair 6
gma03430 Mismatch repair 6
gma03410 Base excision repair 5
gma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03030 DNA replication 9
sly03420 Nucleotide excision repair 3
sly03430 Mismatch repair 3
sly03440 Homologous recombination 2
sly03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03030 DNA replication 5
osa03440 Homologous recombination 2
osa00240 Pyrimidine metabolism 2
osa01232 Nucleotide metabolism 2
osa03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 5
bra03440 Homologous recombination 3
bra03420 Nucleotide excision repair 2
bra03430 Mismatch repair 2
bra00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03030 DNA replication 7
vvi03410 Base excision repair 3
vvi03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03030 DNA replication 7
ppo03430 Mismatch repair 5
ppo03410 Base excision repair 4
ppo03420 Nucleotide excision repair 4
ppo03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03030 DNA replication 12
mtr03420 Nucleotide excision repair 3
mtr03430 Mismatch repair 2
mtr03440 Homologous recombination 2
mtr03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 8
tae03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03030 DNA replication 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 2
ghi03082 ATP-dependent chromatin remodeling 2
ghi03083 Polycomb repressive complex 2
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 2
ghi03083 Polycomb repressive complex 2
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 8
bna03420 Nucleotide excision repair 6
bna03430 Mismatch repair 6
bna03410 Base excision repair 4
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 8
bna03420 Nucleotide excision repair 6
bna03430 Mismatch repair 6
bna03410 Base excision repair 4
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03030 DNA replication 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03030 DNA replication 9
bdi03440 Homologous recombination 4
bdi03460 Fanconi anemia pathway 3
bdi03420 Nucleotide excision repair 2
bdi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03030 DNA replication 8
bdi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 5
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
nta03440 Homologous recombination 2
nta03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 10
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821018 100815444 100808422 101252679 4330814 100192665 103870890 100240999 7459070 112421389 123093282 123098549 123397519 123449537 107886349 107909976 125587556 106453211 5716605 8069239 102588496 100834083 100821358 107780880 107821293
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