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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7460927   uncharacterized LOC7460927 
 ppo-r.4   7460927   uncharacterized LOC7460927 
 ppo-m.4   7460927   uncharacterized LOC7460927 
 ppo-u.5   18096224   uncharacterized LOC18096224 
 gma-u.5   100777481   uncharacterized LOC100777481 
 gma-u.5   100775631   uncharacterized LOC100775631 
 mtr-u.5   11412638   uncharacterized LOC11412638 
 mtr-u.5   25499992   uncharacterized LOC25499992 
 ath-u.5   AT1G77800   PHD finger family protein 
 vvi-u.5   100245365   uncharacterized LOC100245365 
 sly-u.5   101257427   uncharacterized LOC101257427 
 osa-u.5   107277268   uncharacterized LOC107277268 
 osa-u.5   4340450   uncharacterized LOC4340450 
 zma-u.5   103627799   PHD finger family protein 
 zma-u.5   103654224   uncharacterized LOC103654224 
 zma-u.5   100279001   uncharacterized LOC100279001 

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Top 50 coexpressed genes to 7460927 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7460927 (ppo-u.5 coexpression data)

CoexMap"7460927"


ppoLOC7460927 | Entrez gene ID : 7460927    
Species ppo gma mtr ath vvi sly osa zma hvu sot tae nta bra cit ghi bna bdi sbi cre
Paralog 4 2 2 1 1 1 2 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (481 genes)  IEA  
GO CC
GO MF
Protein XP_024457870.2 [sequence] [blastp]
XP_024457871.2 [sequence] [blastp]
XP_024457872.2 [sequence] [blastp]
XP_024457873.2 [sequence] [blastp]
XP_024457875.2 [sequence] [blastp]
XP_024457876.2 [sequence] [blastp]
XP_052308674.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  chlo 1,  mito 1,  chlo_mito 1  (predict for XP_024457870.2)
nucl 7,  chlo 1,  mito 1,  chlo_mito 1  (predict for XP_024457871.2)
nucl 8,  chlo 1  (predict for XP_024457872.2)
nucl 7,  chlo 1,  mito 1,  chlo_mito 1  (predict for XP_024457873.2)
nucl 7,  chlo 1,  mito 1,  chlo_mito 1  (predict for XP_024457875.2)
nucl 8,  chlo 1  (predict for XP_024457876.2)
nucl 7,  chlo 1,  mito 1,  chlo_mito 1  (predict for XP_052308674.1)
Subcellular
localization
TargetP
other 6,  mito 3  (predict for XP_024457870.2)
other 6,  mito 3  (predict for XP_024457871.2)
other 6,  mito 3  (predict for XP_024457872.2)
other 6,  mito 3  (predict for XP_024457873.2)
other 6,  mito 3  (predict for XP_024457875.2)
other 6,  mito 3  (predict for XP_024457876.2)
other 6,  mito 3  (predict for XP_052308674.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7460927

.
ppo-r.4
for
7460927

.
ppo-m.4
for
7460927

.
ppo-u.5
for
18096224

.
gma-u.5
for
100777481

.
gma-u.5
for
100775631

.
mtr-u.5
for
11412638

.
mtr-u.5
for
25499992

.
ath-u.5
for
AT1G77800

.
vvi-u.5
for
100245365

.
sly-u.5
for
101257427

.
osa-u.5
for
107277268

.
osa-u.5
for
4340450

.
zma-u.5
for
103627799

.
zma-u.5
for
103654224

.
zma-u.5
for
100279001

.


Ortholog ID: 4833
Species ath gma gma sly osa osa zma zma bra bra vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna sbi sbi sot cit bdi bdi nta nta
Symbol AT1G77800 LOC100777481 LOC100775631 LOC101257427 LOC107277268 LOC4340450 LOC103627799 LOC103654224 LOC103853101 LOC103832208 LOC100245365 LOC7460927 LOC18096224 LOC25499992 LOC11412638 LOC123164422 LOC123154035 LOC123402848 LOC123409909 LOC107921987 LOC107918189 LOC106415380 LOC106400322 LOC8078937 LOC8070752 LOC102590292 LOC102608502 LOC100826983 LOC100828066 LOC107818515 LOC107792434
Function* PHD finger family protein uncharacterized LOC100777481 uncharacterized LOC100775631 uncharacterized LOC101257427 uncharacterized LOC107277268 uncharacterized LOC4340450 PHD finger family protein uncharacterized LOC103654224 uncharacterized LOC103853101 uncharacterized LOC103832208 uncharacterized LOC100245365 uncharacterized LOC7460927 uncharacterized LOC18096224 uncharacterized LOC25499992 uncharacterized LOC11412638 uncharacterized LOC123164422 uncharacterized LOC123154035 uncharacterized LOC123402848 uncharacterized LOC123409909 uncharacterized LOC107921987 uncharacterized LOC107918189 uncharacterized LOC106415380 uncharacterized LOC106400322 uncharacterized LOC8078937 uncharacterized LOC8070752 uncharacterized LOC102590292 uncharacterized LOC102608502 uncharacterized LOC100826983 uncharacterized LOC100828066 uncharacterized LOC107818515 uncharacterized LOC107792434
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04120 Ubiquitin mediated proteolysis 2
ath03083 Polycomb repressive complex 2
ath03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00310 Lysine degradation 4
gma04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00310 Lysine degradation 4
gma04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04120 Ubiquitin mediated proteolysis 2
osa03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 3
zma03015 mRNA surveillance pathway 3
zma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03083 Polycomb repressive complex 3
bra03250 Viral life cycle - HIV-1 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00310 Lysine degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 2
tae04120 Ubiquitin mediated proteolysis 2
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03083 Polycomb repressive complex 3
hvu03013 Nucleocytoplasmic transport 2
hvu03250 Viral life cycle - HIV-1 2
hvu03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00310 Lysine degradation 2
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03420 Nucleotide excision repair 2
bna00562 Inositol phosphate metabolism 2
bna04070 Phosphatidylinositol signaling system 2
bna04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03420 Nucleotide excision repair 2
bna00562 Inositol phosphate metabolism 2
bna04070 Phosphatidylinositol signaling system 2
bna04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 2
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 3
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03082 ATP-dependent chromatin remodeling 2
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 4
bdi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 4
bdi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03022 Basal transcription factors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 844117 100777481 100775631 101257427 107277268 4340450 103627799 103654224 103853101 103832208 100245365 7460927 18096224 25499992 11412638 123164422 123154035 123402848 123409909 107921987 107918189 106415380 106400322 8078937 8070752 102590292 102608502 100826983 100828066 107818515 107792434
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