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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7461331   uncharacterized LOC7461331 
 ppo-r.4   7461331   uncharacterized LOC7461331 
 ppo-u.5   7476672   uncharacterized LOC7476672 
 ppo-u.5   18100755   uncharacterized LOC18100755 
 ppo-u.5   7476802   uncharacterized LOC7476802 
 gma-u.5   100811524   uncharacterized LOC100811524 
 gma-u.5   100803746   uncharacterized LOC100803746 
 mtr-u.5   120579462   uncharacterized LOC120579462 
 mtr-u.5   11425686   uncharacterized LOC11425686 
 ath-u.5   AT2G24530   transcriptional regulator of RNA polII, SAGA, subunit 
 ath-u.5   AT4G31440   transcriptional regulator of RNA polII, SAGA, subunit 
 vvi-u.5   104880381   uncharacterized LOC104880381 
 vvi-u.5   100852560   uncharacterized LOC100852560 
 sly-u.5   101254809   uncharacterized LOC101254809 
 sly-u.5   101249541   uncharacterized LOC101249541 
 osa-u.5   4337266   uncharacterized LOC4337266 
 zma-u.5   100275576   uncharacterized LOC100275576 
 zma-u.5   103645818   uncharacterized LOC103645818 

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Top 50 coexpressed genes to 7461331 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7461331 (ppo-u.5 coexpression data)

CoexMap"7461331"


ppoLOC7461331 | Entrez gene ID : 7461331    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 5 2 2 2 2 2 1 2 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (481 genes)  IEA  
GO CC
GO:0000124 [list] [network] SAGA complex  (24 genes)  IEA  
GO MF
GO:0003713 [list] [network] transcription coactivator activity  (49 genes)  IEA  
Protein XP_002304832.4 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  cysk 1  (predict for XP_002304832.4)
Subcellular
localization
TargetP
other 8  (predict for XP_002304832.4)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7461331

.
ppo-r.4
for
7461331

.
ppo-u.5
for
7476672

.
ppo-u.5
for
18100755

.
ppo-u.5
for
7476802

.
gma-u.5
for
100811524

.
gma-u.5
for
100803746

.
mtr-u.5
for
120579462

.
mtr-u.5
for
11425686

.
ath-u.5
for
AT2G24530

.
ath-u.5
for
AT4G31440

.
vvi-u.5
for
104880381

.
vvi-u.5
for
100852560

.
sly-u.5
for
101254809

.
sly-u.5
for
101249541

.
osa-u.5
for
4337266

.
zma-u.5
for
100275576

.
zma-u.5
for
103645818

.


Ortholog ID: 3201
Species ath ath gma sly sly osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna sbi sot sot cit cit bdi nta nta
Symbol AT4G31440 AT2G24530 LOC100811524 LOC101249541 LOC101254809 LOC4337266 LOC100275576 LOC103645818 LOC103851844 LOC103842250 LOC100852560 LOC104880381 LOC18100755 LOC7476802 LOC120579462 LOC11425686 LOC123054849 LOC123047017 LOC123428071 LOC107958329 LOC107932990 BNAC03G67600D LOC8070257 LOC102582380 LOC102594722 LOC102628352 LOC107174604 LOC100844231 LOC107792395 LOC107809335
Function* transcriptional regulator of RNA polII, SAGA, subunit transcriptional regulator of RNA polII, SAGA, subunit uncharacterized LOC100811524 uncharacterized LOC101249541 uncharacterized LOC101254809 uncharacterized LOC4337266 uncharacterized LOC100275576 uncharacterized LOC103645818 uncharacterized LOC103851844 uncharacterized LOC103842250 uncharacterized LOC100852560 uncharacterized LOC104880381 uncharacterized LOC18100755 uncharacterized LOC7476802 uncharacterized LOC120579462 uncharacterized LOC11425686 uncharacterized LOC123054849 uncharacterized LOC123047017 uncharacterized LOC123428071 uncharacterized LOC107958329 uncharacterized LOC107932990 uncharacterized BNAC03G67600D uncharacterized LOC8070257 uncharacterized LOC102582380 uncharacterized LOC102594722 uncharacterized LOC102628352 uncharacterized LOC107174604 uncharacterized LOC100844231 uncharacterized LOC107792395 uncharacterized LOC107809335
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00520 Amino sugar and nucleotide sugar metabolism 3
ath03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03083 Polycomb repressive complex 2
bra03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03083 Polycomb repressive complex 3
bra03250 Viral life cycle - HIV-1 3
bra03040 Spliceosome 2
bra03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 3
vvi03082 ATP-dependent chromatin remodeling 2
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03083 Polycomb repressive complex 2
ghi00270 Cysteine and methionine metabolism 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 5
sot00195 Photosynthesis 3
sot03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03022 Basal transcription factors 2
nta03040 Spliceosome 2
nta00561 Glycerolipid metabolism 2
nta00564 Glycerophospholipid metabolism 2
nta04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03022 Basal transcription factors 2
nta03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 829271 816989 100811524 101249541 101254809 4337266 100275576 103645818 103851844 103842250 100852560 104880381 18100755 7476802 120579462 11425686 123054849 123047017 123428071 107958329 107932990 106390045 8070257 102582380 102594722 102628352 107174604 100844231 107792395 107809335
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