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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7464543   starch synthase 1, chloroplastic/amyloplastic 
 ppo-r.4   7464543   starch synthase 1, chloroplastic/amyloplastic 
 ppo-m.4   7464543   starch synthase 1, chloroplastic/amyloplastic 
 ppo-u.5   7495978   granule-bound starch synthase 2, chloroplastic/amyloplastic 
 gma-u.5   100301883   starch synthase IIa-1 
 gma-u.5   100807354   soluble starch synthase 1, chloroplastic/amyloplastic 
 mtr-u.5   11427675   granule-bound starch synthase 2, chloroplastic/amyloplastic 
 mtr-u.5   11421652   soluble starch synthase 1, chloroplastic/amyloplastic 
 ath-u.5   SS2   starch synthase 2 
 ath-u.5   SS1   Glycogen/starch synthases, ADP-glucose type 
 vvi-u.5   100261002   granule-bound starch synthase 2, chloroplastic/amyloplastic 
 vvi-u.5   100250417   starch synthase 1, chloroplastic/amyloplastic 
 sly-u.5   101259221   soluble starch synthase 1, chloroplastic/amyloplastic 
 sly-u.5   101252941   granule-bound starch synthase 2, chloroplastic/amyloplastic 
 osa-u.5   4348711   soluble starch synthase 2-1, chloroplastic/amyloplastic-like 
 osa-u.5   4340567   soluble starch synthase 2-3, chloroplastic/amyloplastic-like 
 osa-u.5   4330709   soluble starch synthase 2-2, chloroplastic/amyloplastic-like 
 zma-u.5   541656   starch synthase homolog 1 
 zma-u.5   100136828   starch synthase IIc precursor 
 zma-u.5   100101526   starch synthase IIb-2 precursor 

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Top 50 coexpressed genes to 7464543 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7464543 (ppo-u.5 coexpression data)

CoexMap"7464543"


ppoLOC7464543 | Entrez gene ID : 7464543    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 4 2 2 2 2 2 3 3 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop00500 [list] [network] Starch and sucrose metabolism (188 genes)
GO BP
GO CC
GO:0009507 [list] [network] chloroplast  (718 genes)  IEA  
GO MF
GO:0004373 [list] [network] alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity  (7 genes)  IEA  
Protein XP_024442653.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  cyto 3,  chlo_mito 3  (predict for XP_024442653.2)
Subcellular
localization
TargetP
other 5  (predict for XP_024442653.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7464543

.
ppo-r.4
for
7464543

.
ppo-m.4
for
7464543

.
ppo-u.5
for
7495978

.
gma-u.5
for
100301883

.
gma-u.5
for
100807354

.
mtr-u.5
for
11427675

.
mtr-u.5
for
11421652

.
ath-u.5
for
SS2

.
ath-u.5
for
SS1

.
vvi-u.5
for
100261002

.
vvi-u.5
for
100250417

.
sly-u.5
for
101259221

.
sly-u.5
for
101252941

.
osa-u.5
for
4348711

.
osa-u.5
for
4340567

.
osa-u.5
for
4330709

.
zma-u.5
for
541656

.
zma-u.5
for
100136828

.
zma-u.5
for
100101526

.


Ortholog ID: 1701
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol SS2 SS1 LOC100301883 LOC100301884 LOC101252941 LOC101259221 LOC4348711 LOC4340567 LOC542481 LOC100136828 LOC103842772 LOC103870956 LOC100250417 LOC100261002 LOC7495978 LOC7464543 LOC11427675 LOC11421652 LOC542986 LOC123159571 LOC123406939 LOC123429483 LOC107890446 LOC107938077 LOC106453257 LOC125587589 CHLRE_04g215150v5 CHLRE_03g185250v5 LOC110430978 LOC8067363 LOC102583115 LOC102600045 LOC102614846 LOC102630022 LOC100835372 LOC100822651 LOC107812614 LOC107778346
Function* starch synthase 2 Glycogen/starch synthases, ADP-glucose type starch synthase IIa-1 starch synthase IIa-2 granule-bound starch synthase 2, chloroplastic/amyloplastic soluble starch synthase 1, chloroplastic/amyloplastic soluble starch synthase 2-1, chloroplastic/amyloplastic-like soluble starch synthase 2-3, chloroplastic/amyloplastic-like soluble starch synthase 2-3, chloroplastic/amyloplastic starch synthase IIc precursor starch synthase 2, chloroplastic/amyloplastic starch synthase 2, chloroplastic/amyloplastic starch synthase 1, chloroplastic/amyloplastic granule-bound starch synthase 2, chloroplastic/amyloplastic granule-bound starch synthase 2, chloroplastic/amyloplastic starch synthase 1, chloroplastic/amyloplastic granule-bound starch synthase 2, chloroplastic/amyloplastic soluble starch synthase 1, chloroplastic/amyloplastic soluble starch synthase 2-3, chloroplastic/amyloplastic soluble starch synthase 2-3, chloroplastic/amyloplastic starch synthase 1, chloroplastic/amyloplastic soluble starch synthase 2-1, chloroplastic/amyloplastic-like granule-bound starch synthase 2, chloroplastic/amyloplastic starch synthase 1, chloroplastic/amyloplastic starch synthase 2, chloroplastic/amyloplastic starch synthase 2, chloroplastic/amyloplastic-like uncharacterized protein uncharacterized protein soluble starch synthase 1, chloroplastic/amyloplastic soluble starch synthase 2-1, chloroplastic/amyloplastic granule-bound starch synthase 2, chloroplastic/amyloplastic-like soluble starch synthase 1, chloroplastic/amyloplastic-like granule-bound starch synthase 2, chloroplastic/amyloplastic starch synthase 1, chloroplastic/amyloplastic soluble starch synthase 2-2, chloroplastic/amyloplastic soluble starch synthase 2-2, chloroplastic/amyloplastic granule-bound starch synthase 2, chloroplastic/amyloplastic granule-bound starch synthase 2, chloroplastic/amyloplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00500 Starch and sucrose metabolism 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00061 Fatty acid biosynthesis 2
gma00780 Biotin metabolism 2
gma01212 Fatty acid metabolism 2
gma01240 Biosynthesis of cofactors 2
gma00290 Valine, leucine and isoleucine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00900 Terpenoid backbone biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00500 Starch and sucrose metabolism 4
sly00460 Cyanoamino acid metabolism 2
sly00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01040 Biosynthesis of unsaturated fatty acids 2
osa01212 Fatty acid metabolism 2
osa03008 Ribosome biogenesis in eukaryotes 2
osa00290 Valine, leucine and isoleucine biosynthesis 2
osa00770 Pantothenate and CoA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00500 Starch and sucrose metabolism 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00500 Starch and sucrose metabolism 4
zma00061 Fatty acid biosynthesis 4
zma01212 Fatty acid metabolism 4
zma00620 Pyruvate metabolism 3
zma00780 Biotin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00906 Carotenoid biosynthesis 3
vvi00500 Starch and sucrose metabolism 3
vvi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00500 Starch and sucrose metabolism 3
vvi00520 Amino sugar and nucleotide sugar metabolism 2
vvi01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00500 Starch and sucrose metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01230 Biosynthesis of amino acids 3
mtr00500 Starch and sucrose metabolism 2
mtr00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 9
tae00520 Amino sugar and nucleotide sugar metabolism 3
tae01250 Biosynthesis of nucleotide sugars 3
tae00908 Zeatin biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 5
tae00908 Zeatin biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00500 Starch and sucrose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 2
ghi00250 Alanine, aspartate and glutamate metabolism 2
ghi00760 Nicotinate and nicotinamide metabolism 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00052 Galactose metabolism 3
ghi04016 MAPK signaling pathway - plant 2
ghi04075 Plant hormone signal transduction 2
ghi00905 Brassinosteroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00592 alpha-Linolenic acid metabolism 2
cre00500 Starch and sucrose metabolism 2
cre00561 Glycerolipid metabolism 2
cre00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00500 Starch and sucrose metabolism 9
sbi00710 Carbon fixation by Calvin cycle 2
sbi01200 Carbon metabolism 2
sbi01230 Biosynthesis of amino acids 2
sbi00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00500 Starch and sucrose metabolism 9
sot00900 Terpenoid backbone biosynthesis 3
sot00520 Amino sugar and nucleotide sugar metabolism 2
sot01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00040 Pentose and glucuronate interconversions 3
sot00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00500 Starch and sucrose metabolism 2
cit04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01040 Biosynthesis of unsaturated fatty acids 2
bdi01212 Fatty acid metabolism 2
bdi00860 Porphyrin metabolism 2
bdi00900 Terpenoid backbone biosynthesis 2
bdi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00860 Porphyrin metabolism 4
bdi01040 Biosynthesis of unsaturated fatty acids 2
bdi01212 Fatty acid metabolism 2
bdi00196 Photosynthesis - antenna proteins 2
bdi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 6
nta00520 Amino sugar and nucleotide sugar metabolism 2
nta01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 6
nta00520 Amino sugar and nucleotide sugar metabolism 2
nta01250 Biosynthesis of nucleotide sugars 2
nta00906 Carotenoid biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820294 832497 100301883 100301884 101252941 101259221 4348711 4340567 542481 100136828 103842772 103870956 100250417 100261002 7495978 7464543 11427675 11421652 542986 123159571 123406939 123429483 107890446 107938077 106453257 125587589 5724271 5717432 110430978 8067363 102583115 102600045 102614846 102630022 100835372 100822651 107812614 107778346
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